PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G19670.5
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21557.8 Da    PI: 8.6263
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G19670.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-262574251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLCdae+a+++fs+ g+lye++s
  OPUNC08G19670.5 25 RIEDRTSRQVRFSKRRSGMFKKAYELSVLCDAEIALVVFSPAGRLYEFAS 74
                     8***********************************************86 PP
2K-box17.51.7e-071111651670
            K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                        q+e++ L + + ++ +    +l  ++++L++ eL+ Le+++ ++l+ +++k +
  OPUNC08G19670.5 111 LRQKEHSVLDDPVPKINHITQCVLESNVNELNIAELRGLEEAMTNALTVVKNKLM 165
                      5567777777777777766677777889**********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.0951676IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-351675IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-281838IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-291894IPR002100Transcription factor, MADS-box
CDDcd002651.00E-351886No hitNo description
PfamPF003196.4E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283853IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-285374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MERRLPAADE AGGRRTKRGK VELRRIEDRT SRQVRFSKRR SGMFKKAYEL SVLCDAEIAL  60
VVFSPAGRLY EFASSTSSID KIFGRYWDLM HTTIDLNIEA RDYRVDCNIQ LRQKEHSVLD  120
DPVPKINHIT QCVLESNVNE LNIAELRGLE EAMTNALTVV KNKLMMKVAG VLPQSEKKSC  180
WISEPDQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-181888371Myocyte-specific enhancer factor 2B
1tqe_Q2e-181888371Myocyte-specific enhancer factor 2B
1tqe_R2e-181888371Myocyte-specific enhancer factor 2B
1tqe_S2e-181888371Myocyte-specific enhancer factor 2B
6c9l_A2e-181888371Myocyte-specific enhancer factor 2B
6c9l_B2e-181888371Myocyte-specific enhancer factor 2B
6c9l_C2e-181888371Myocyte-specific enhancer factor 2B
6c9l_D2e-181888371Myocyte-specific enhancer factor 2B
6c9l_E2e-181888371Myocyte-specific enhancer factor 2B
6c9l_F2e-181888371Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11320RRTKRGKV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429800.0AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649438.11e-105MADS-box transcription factor 51-like isoform X2
TrEMBLA0A0E0LX991e-137A0A0E0LX99_ORYPU; Uncharacterized protein
STRINGORGLA08G0229900.11e-106(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-32MIKC_MADS family protein