PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G19870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 237aa    MW: 25371.8 Da    PI: 9.6837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G19870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.98.7e-32191541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr...atksgyWk.atgkd 89 
                      lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p +  +++ e yfF+ r  ++  g+  +r   +++ g Wk a g+d
  OPUNC08G19870.1  19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGENYFFAVRPAASGGGR-CRRqqvTASGGCWKpAGGRD 108
                      79****************************.8899998***********43..467899******99887554.333232455899**66678* PP

              NAM  90 kevlsk....kgelvglkktLvfy..kgrapkge.ktdWvmheyrl 128
                      k+v+++    +++lvg+kk +vf   +g+ap +   + Wvmhey+l
  OPUNC08G19870.1 109 KPVVASsrcgGSHLVGVKKGMVFVprQGKAPAAAaGSCWVMHEYSL 154
                      ***99888988889**********98888887652688******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-4114178IPR003441NAC domain
PROSITE profilePS5100542.53419178IPR003441NAC domain
PfamPF023652.0E-2020154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MMERAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL  60
DPWDIPGASS DGENYFFAVR PAASGGGRCR RQQVTASGGC WKPAGGRDKP VVASSRCGGS  120
HLVGVKKGMV FVPRQGKAPA AAAGSCWVMH EYSLALPMHK KGCLAEAEEW VVCRIFQRSS  180
SSSRSPRRPD NDVRQTMPAG AEFGRSPSPS SSPSSSQSSC VTSSSDQEEC NVTGRKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-301918420174NAC domain-containing protein 19
3swm_B1e-301918420174NAC domain-containing protein 19
3swm_C1e-301918420174NAC domain-containing protein 19
3swm_D1e-301918420174NAC domain-containing protein 19
3swp_A1e-301918420174NAC domain-containing protein 19
3swp_B1e-301918420174NAC domain-containing protein 19
3swp_C1e-301918420174NAC domain-containing protein 19
3swp_D1e-301918420174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6902490.0KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659635.11e-111PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A0E0LXC61e-172A0A0E0LXC6_ORYPU; Uncharacterized protein
STRINGOPUNC08G19870.11e-173(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-38NAC domain containing protein 83