PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G20750.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SRS

Protein Properties

Length: 241aa MW: 24045.6 Da PI: 8.421

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G20750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216.9	4.4e-67	31	170	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 t+sCqdCGnqakkdC+h RCRtCCksrgfdCathvkstWvpaakrrerq+ la+a +++skr+r++ ++++a+s+t ++s+ ++ OPUNC08G20750.1 31 STISCQDCGNQAKKDCTHLRCRTCCKSRGFDCATHVKSTWVPAAKRRERQTLLASA---------AESSKRPRDS--AAAAATSTTPTTSSGEQ 113 689********************************************9999985.........6788999997..34444444444444456 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ +++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G+e+ OPUNC08G20750.1 114 QMMVGERFPREVSSEAVFRCVRLGPVDEAEAEVAYQTTVSIGGHVFKGILHDVGPEH 170 6888899**********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	35	No hit	No description
Pfam	PF05142	1.0E-59	32	169	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.9E-27	34	76	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-23	120	168	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MLMLRGGGGG GGREGSRAAA AAAAGGTAAT STISCQDCGN QAKKDCTHLR CRTCCKSRGF 60 DCATHVKSTW VPAAKRRERQ TLLASAAESS KRPRDSAAAA ATSTTPTTSS GEQQMMVGER 120 FPREVSSEAV FRCVRLGPVD EAEAEVAYQT TVSIGGHVFK GILHDVGPEH TSGGGGGMGG 180 RHAAAGEGSS PSTAAAPGGG GGGEGGSSSV AAAVSSSAVV MDPYPTPGPF GGAHFFHGHP 240 R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	12	RGGGGGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	1e-154	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648772.1	1e-102	protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	2e-54	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A0E0LXP0	1e-170	A0A0E0LXP0_ORYPU; Uncharacterized protein
STRING	OPUNC08G20750.1	1e-171	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	7e-50	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]