PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G21240.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 520aa MW: 53727.7 Da PI: 9.0021

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G21240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H OPUNC08G21240.1 42 FVCEVCNKGFQREQNLQLHRRGH 64 89*******************88 PP
2	zf-C2H2	13.3	0.00025	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ OPUNC08G21240.1 118 WKCDKCNKRYAVQSDWKAHSKTC 140 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.47E-8	41	64	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.0E-6	41	64	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0041	42	64	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.3E-5	42	64	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.094	42	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	83	113	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-5	106	139	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.47E-8	113	138	No hit	No description
SMART	SM00355	110	118	138	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MAAASSAHYF GPQMQQPASL QNNAAAPVIA LSPHTLLATN RFVCEVCNKG FQREQNLQLH 60 RRGHNLPWKL KQKNPKETRR RVYLCPEPSC VHHDPSRALG DLTGIKKHYS RKHGEKKWKC 120 DKCNKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESGRMPPMG 180 AALYGAAAGM AIGGLTGMAA SQLQSFQDHS AITTANAAAQ FDHLMATSSA AASPAFRAAQ 240 PTSSSTSPFY LGGGGADDGQ THTSFLHGKP AFHGLMQLPE QQHHQQGSNG GGLLNLSYFS 300 GGNGGHHHQE GRLVFPDQFN GVATGNGACT GSGEHGNGGN NADSTSIFSG NMMGGGGGFS 360 SLYSSSDQTI PPPQMSATAL LQKAAQMGAT TSGGGGGGGG SVNSLLRGLG NGGGGALNGK 420 SAGAATFIMS GESSSRSTAS QTAENESQLR ELMMNTLSAT GSGAAAATVF VGGGGFPGVD 480 DGKLSTRDFL GVSGGAPGLQ LRHGGAAGMG MAGSLDQEMK

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MAAASSAHYF GPQMQQPASL QNNAAAPVIA LSPHTLLATN RFVCEVCNKG FQREQNLQLH  60
RRGHNLPWKL KQKNPKETRR RVYLCPEPSC VHHDPSRALG DLTGIKKHYS RKHGEKKWKC  120
DKCNKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESGRMPPMG  180
AALYGAAAGM AIGGLTGMAA SQLQSFQDHS AITTANAAAQ FDHLMATSSA AASPAFRAAQ  240
PTSSSTSPFY LGGGGADDGQ THTSFLHGKP AFHGLMQLPE QQHHQQGSNG GGLLNLSYFS  300
GGNGGHHHQE GRLVFPDQFN GVATGNGACT GSGEHGNGGN NADSTSIFSG NMMGGGGGFS  360
SLYSSSDQTI PPPQMSATAL LQKAAQMGAT TSGGGGGGGG SVNSLLRGLG NGGGGALNGK  420
SAGAATFIMS GESSSRSTAS QTAENESQLR ELMMNTLSAT GSGAAAATVF VGGGGFPGVD  480
DGKLSTRDFL GVSGGAPGLQ LRHGGAAGMG MAGSLDQEMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-34	114	179	3	68	Zinc finger protein JACKDAW
5b3h_F	6e-34	114	179	3	68	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072128	0.0	AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence.
GenBank	AK099830	0.0	AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650033.1	0.0	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883278.1	0.0	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883279.1	0.0	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883280.1	0.0	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883281.1	0.0	protein indeterminate-domain 6, chloroplastic
Swissprot	Q9ZUL3	1e-114	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A0E0LXU8	0.0	A0A0E0LXU8_ORYPU; Uncharacterized protein
STRING	OPUNC08G21240.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-102	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]