PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC09G00630.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 416aa MW: 44728.4 Da PI: 8.8772

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC09G00630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.7e-05	309	331	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cg++Fs+ L H+++H OPUNC09G00630.1 309 YACRKCGTMFSSGQALGGHMKSH 331 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.13E-5	306	335	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.5E-4	308	336	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	309	337	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.3E-7	309	333	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	311	331	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MAPSRISSSE LERPVGSYRF HIPRQPPRIQ AEGGKRHTII GDRRHGGTAL WRRGSMLPPS 60 LPRWGVEDAH GYVDGGSRQH LSELGTSSAL SAPIGGWIWR SVAAQAHGEV IDVGRCEDEA 120 SDHMQPPTAS PSSMEMLSEE RISASGSVVR ERQLHGYEEQ PFLPCLATMT AKGAAREIST 180 KKIIKKEHGE AGDLTAAMLV PSWTSTGNHI SKNPTGYLEH LPELSKRAHR EAYGNMQLAT 240 GDLVAGLHKQ AAITVPPPNI SEIGGHLTAH KNSEMTVGKG VQNTIDASVA KEVTRSLASS 300 ARQSRRGPYA CRKCGTMFSS GQALGGHMKS HYSDERPGDE RVPSAFVGSF LSLITPMNVS 360 NVSVPGSRNP HASSVPNKEE GRLLVMGATP LNGVPKGSFR LFGENIAEAP KEEPME

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MAPSRISSSE LERPVGSYRF HIPRQPPRIQ AEGGKRHTII GDRRHGGTAL WRRGSMLPPS  60
LPRWGVEDAH GYVDGGSRQH LSELGTSSAL SAPIGGWIWR SVAAQAHGEV IDVGRCEDEA  120
SDHMQPPTAS PSSMEMLSEE RISASGSVVR ERQLHGYEEQ PFLPCLATMT AKGAAREIST  180
KKIIKKEHGE AGDLTAAMLV PSWTSTGNHI SKNPTGYLEH LPELSKRAHR EAYGNMQLAT  240
GDLVAGLHKQ AAITVPPPNI SEIGGHLTAH KNSEMTVGKG VQNTIDASVA KEVTRSLASS  300
ARQSRRGPYA CRKCGTMFSS GQALGGHMKS HYSDERPGDE RVPSAFVGSF LSLITPMNVS  360
NVSVPGSRNP HASSVPNKEE GRLLVMGATP LNGVPKGSFR LFGENIAEAP KEEPME

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242186	0.0	AK242186.1 Oryza sativa Japonica Group cDNA, clone: J075161K18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611340.1	0.0	uncharacterized protein LOC4346425
TrEMBL	A0A0E0LYC5	0.0	A0A0E0LYC5_ORYPU; Uncharacterized protein
STRING	OPUNC09G00630.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16216	12	13