PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G00900.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 244aa    MW: 26634.7 Da    PI: 10.2092
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G00900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57333.79.8e-1161150397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      f r+wse De+ +L  l    +k+g+ ps      +   ++  + +++ s++ eK+rrL+ K+ k+ +         +  +  ++ fels  iW
  OPUNC09G00900.1  61 FARVWSEADELRILECLAAHVKKHGAPPSRSQLPEVLAGRGLDKEEFTVSEIYEKVRRLRSKYDKMLSG-----PRPVPGDIGRNRFELSTAIW 149
                      89***********************988886666666678888999*******************9998.....55677888899999999999 PP

           DUF573  97 g 97 
                      g
  OPUNC09G00900.1 150 G 150
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-1461150IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MATSRRRAAH PGSASAIPSS SSPADELPGR GRDAQGAERL EVEGSVPAGE KAKATKKPVA  60
FARVWSEADE LRILECLAAH VKKHGAPPSR SQLPEVLAGR GLDKEEFTVS EIYEKVRRLR  120
SKYDKMLSGP RPVPGDIGRN RFELSTAIWG NGNPIAPPPT GTRGRRDLQE LRALYPCLVD  180
AVERISASEC GGDVPKMGLA FIDDGTAVRM NALVKKQRVL ELKSMLKLDS MRKEVMRTLL  240
NIMD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056801e-145AP005680.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1352_A10.
GenBankAP0057251e-145AP005725.4 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0025H18.
GenBankAP0149651e-145AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610770.11e-132uncharacterized protein LOC4346437
TrEMBLA0A0E0LYF51e-176A0A0E0LYF5_ORYPU; Uncharacterized protein
STRINGOPUNC09G00900.11e-177(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1462199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-07DNA-binding storekeeper protein-related transcriptional regulator