PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G01480.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 338aa    MW: 36284.3 Da    PI: 5.6552
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G01480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.82.2e-081356441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     + C+ + + +  +fC+ ++  lC++C    H+       H++vp
  OPUNC09G01480.1 13 QQCDSCRSAPCAFFCRADSAALCATCDADVHSAnplarrHRRVP 56
                     68*****************************6689999999998 PP
2CCT69.11.2e-23271314144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++ RY+eKrktR+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  OPUNC09G01480.1 271 REARVHRYREKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRS 314
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.6E-151057IPR000315B-box-type zinc finger
PfamPF006434.7E-61456IPR000315B-box-type zinc finger
CDDcd000211.60E-111557No hitNo description
PROSITE profilePS5011911.4331557IPR000315B-box-type zinc finger
PfamPF062031.5E-17271313IPR010402CCT domain
PROSITE profilePS5101716.797271313IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLKLEPEFPG LPQQCDSCRS APCAFFCRAD SAALCATCDA DVHSANPLAR RHRRVPMGVV  60
AAPGAGGAFV VRPAGGVNSS WPIREGRRCD YDDDDAAAAA EEDDEEATSW LLFDPFKGSS  120
DQGLPPFGDA LVADFLNLGG GAGEKEDASS SSKDCSSSHG KSSEGSHEFA VPGEPVPERQ  180
GFGAMSMDII DYDASNFRRG YNFGASLGHS VSISSLENMS TVPDCGVLEI TSSSYLRPSK  240
STIDLFTAAA GSPAAAHSIM SPPHFMGAID REARVHRYRE KRKTRRFEKT IRYASRKAYA  300
ETRPRIKGRF AKRSDADLEV DQYLSTTADS SCGVVPTF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as repressor of flowering under SD conditions, independently of HD1, EHD1, MADS50 and MADS51. Controls flowering time under SD conditions by negatively regulating the expression of HD3A and FTL. {ECO:0000269|PubMed:18449564}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases after the beginning of the dark period, peaks at dawn, stays high four hours and gradually decreases until sunset. {ECO:0000269|PubMed:18449564}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018870.0AB001887.1 Oryza sativa Japonica Group cDNA for zinc finger protein, complete cds, clone:S12569.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612389.10.0zinc finger protein CO3-like
SwissprotO821170.0CO3_ORYSJ; Zinc finger protein CO3
TrEMBLA0A0E0LYN20.0A0A0E0LYN2_ORYPU; Uncharacterized protein
STRINGOPUNC09G01480.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1435899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.12e-14CONSTANS-like 1