PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G03530.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 235aa    MW: 26590.2 Da    PI: 8.0909
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G03530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-17114162355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +grW++eIrdp+    +  r++lg+f+tae+Aa+a++   ++++g
  OPUNC09G03530.1 114 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIYG 162
                      9*******.**********75....44*******************87777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.3E-37113176IPR001471AP2/ERF domain
PROSITE profilePS5103222.563113170IPR001471AP2/ERF domain
CDDcd000188.75E-28114169No hitNo description
PRINTSPR003673.7E-11114125IPR001471AP2/ERF domain
PfamPF008473.0E-9114154IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-20114171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-30114170IPR001471AP2/ERF domain
PRINTSPR003673.7E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRRRVSSSSS SSSSSPTRDH KTRRSRRKLV VDEDWEAAFR EFLSRDDDDD DGGHHVVVAP  60
LIRSNKCVHG HEVVTSTVGG GAPSSRSRRR SDDDDDDGEQ RRRRRRRERR SYPYRGIRQR  120
PWGRWASEIR DPVKGIRVWL GTFDTAEGAA RAYDDEVRRI YGSNAKTNFP PPTPPPEQPA  180
APVAAERSPS TTPPMTTEDS GDSRILIECC SDDLMDSLLS AFDMTTGDID MRIWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-19114170663ATERF1
3gcc_A9e-19114170663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187106RRRSDDDDDDGEQRRRRRRR
299105QRRRRRR
3100106RRRRRRR
4100107RRRRRRRE
5101108RRRRRRER
6101109RRRRRRERR
7102109RRRRRERR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7204630.0FR720463.1 Oryza eichingeri partial sub1C-1 like gene 1, bio material IRGC 101429.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651344.13e-86ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0LZC91e-166A0A0E0LZC9_ORYPU; Uncharacterized protein
STRINGOPUNC09G03530.11e-167(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP179721010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-26ERF family protein