PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G04260.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 380aa    MW: 40166.4 Da    PI: 7.5546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G04260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05187206120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C  C+k+F+r  n++ H+
  OPUNC09G04260.1 187 FSCVVCNKTFNRFNNMQMHM 206
                      89*****************9 PP
2zf-C2H213.60.0002279301123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C  Cgk+F  + + ++H +++
  OPUNC09G04260.1 279 YACRRCGKRFAVRGDWRTHEKNC 301
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-5182208No hitNo description
SMARTSM003550.84187209IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-5187206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.785187214IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SMARTSM00355230242274IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.28E-6265299No hitNo description
Gene3DG3DSA:3.30.160.601.3E-6265299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558279299IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704279299IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MHPHLYQSHH HQHVAPPTKH GGAGGEEDDQ SMLLLSLWPP GHGHSHSHHH GAVSSACSSS  60
SISAAAASHS GGGGGHGAAA AASSWFHPSH YHGGGGGDAG FLFQEQETNV SISLSIAPPC  120
GGGGGGNAAA MVATGSFAAS SPLPQQQQPM TSSLPSAVVA TPPGGGQVPS QYWIPSAAEI  180
LVGSTQFSCV VCNKTFNRFN NMQMHMWGHG SQYRKGSESL RGAITVAAGT APPASLMRLP  240
CYCCAEGCRN NIEHPRARPL KDFRTLQTHY RRKHGARPYA CRRCGKRFAV RGDWRTHEKN  300
CGKLWFCVCG SDFKHKRSLK DHVRSFGGGH APHIVESSSV AAGAGAADDD DDDYDDDDDN  360
VVSHTQYSSR AHDDADMVVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732990.0AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876264.11e-161zinc finger protein WIP6
TrEMBLA0A0E0LZL20.0A0A0E0LZL2_ORYPU; Uncharacterized protein
STRINGOPUNC09G04260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-97C2H2-like zinc finger protein