PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G06420.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 222aa    MW: 25043.3 Da    PI: 9.7627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G06420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-065377123
                     EEETTTTEEESSHHHHHHHHHH..T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                     ++C+ C+k F r +nL+ H rt  H
  OPUNC09G06420.1 53 FVCEVCNKGFQREENLQLHRRTrsH 77
                     89*******************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.56E-65186No hitNo description
Gene3DG3DSA:3.30.160.603.4E-75274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.7E-65377IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.3655380IPR007087Zinc finger, C2H2
SMARTSM003550.00785377IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805577IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEVETSSGTD ECSSPQSPPP PTKKKKHSLP VTPDSDTEVI ALSPRTLLAT NRFVCEVCNK  60
GFQREENLQL HRRTRSHNLP WKLKQKNALQ AQRRRVYLCP EPTCVHHHPS RALGDLSGIK  120
KHFCRKHGEK KWKCDKRYAV QSDWKAHSNT CGTREYRCDC GTLFSRRRGS FITHRAFCDI  180
LAHDGARLRP SGHLYDSTGE ANSALVLSTV GSHLAEGAVH HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-28128188365Zinc finger protein JACKDAW
5b3h_F8e-28128188365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206031e-159AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626115.11e-106protein indeterminate-domain 4, chloroplastic
RefseqXP_015626116.11e-106protein indeterminate-domain 4, chloroplastic
RefseqXP_015626117.11e-106protein indeterminate-domain 4, chloroplastic
RefseqXP_015626118.11e-106protein indeterminate-domain 4, chloroplastic
SwissprotQ9ZWA62e-91IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0E0M0F21e-164A0A0E0M0F2_ORYPU; Uncharacterized protein
STRINGOPUNC09G06420.11e-165(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-88indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]