PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G10480.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 337aa    MW: 37342.8 Da    PI: 6.431
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G10480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK50.73.6e-16198248352
           RWP-RK   3 keisledlskyFslpikdAAke.LgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k+++ +dl++yF+ + k+AA   L +++T+LK  CR + ++RWP+R+i+sl
  OPUNC09G10480.1 198 KTMTKKDLESYFHITQKSAAHIgLSIGTTALKNLCRANDLPRWPYRQIASL 248
                      899*****************84499***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.174178268IPR003035RWP-RK domain
PfamPF020428.2E-17199248IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAATGRSSSS NVPSGARAAA GSGKLAMVAV GSIECLKKRC RQLRVLIHVN DHRKAVVVLH  60
ASEDGKPDHV LVQNVSPKGD ASVQSTYRID VSGETPESQT EIFNDWYTSF RMDTTGVLYD  120
SDQNVIYGVP RGHPGGDVPR SLAILPPAPK KNHRGKAPAA ESNSSLVDEP VLLVQTDQTT  180
STEKRNKFTF PDQRKRVKTM TKKDLESYFH ITQKSAAHIG LSIGTTALKN LCRANDLPRW  240
PYRQIASLDN KFNNNLKKLI TGWNLGKAVQ GVAKAFELRK EKEQFYQKIM SSMPEQLQGI  300
DEIVHSLPEA DDDIDIEDDE DNNEVMEDNN DENSDEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-104CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696653.11e-164PREDICTED: uncharacterized protein LOC107304984
TrEMBLA0A0E0M1T20.0A0A0E0M1T2_ORYPU; Uncharacterized protein
STRINGOPUNC09G10480.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152171212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-06RWP-RK domain-containing protein