PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G10660.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 382aa    MW: 40084.6 Da    PI: 6.1846
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G10660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.3e-18197251256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OPUNC09G10660.1 197 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 251
                      788899***********************************************98 PP
2HD-ZIP_I/II1278.3e-41197287192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  OPUNC09G10660.1 197 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 287
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-18182247IPR009057Homeodomain-like
SuperFamilySSF466892.1E-18185254IPR009057Homeodomain-like
PROSITE profilePS5007117.07193253IPR001356Homeobox domain
SMARTSM003891.1E-15195257IPR001356Homeobox domain
CDDcd000861.89E-16197254No hitNo description
PfamPF000462.7E-15197251IPR001356Homeobox domain
PROSITE patternPS000270228251IPR017970Homeobox, conserved site
PfamPF021831.5E-10253287IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24253296IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MELGLSLGEA MADAGRELVL GLGMGRREEA AAAAETGRRD HEVRRELEFG SRSSRCGGSS  60
PEPTVRLTLL PMVPGLGLPW PPPPPAASES SECDGWAWAD VICVVGWQGH LEASTRGFDV  120
NRPPSSGGGA GAAEEEQDDV AGAALSSSPN NSAGSFPMDD FSGHGLGGND AAPGGGGGGG  180
DRSCSRASDE DDGGSARKKL RLSKEQSAFL EESFKEHSTL NPKQKLALAK QLNLRPRQVE  240
VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLQKEL AELRALKTVH PFYMHLPATT  300
LSMCPSCERV ASNSVPATAA SAAAPATAAQ PTAPSSGGIA ATSAAAAAPD HRPSSFAALF  360
SSPRRFPLSV APQAQAQPPT SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245253RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364471e-170BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269111e-170KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611029.10.0homeobox-leucine zipper protein HOX11
SwissprotQ67UE20.0HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A0E0M1V00.0A0A0E0M1V0_ORYPU; Uncharacterized protein
STRINGOPUNC09G10660.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-62homeobox from Arabidopsis thaliana