PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G10740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 547aa    MW: 58514.5 Da    PI: 8.542
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G10740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.7e-066688123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C++ F r  nL+ H r+H
  OPUNC09G10740.1 66 YVCEICNQGFQRDQNLQMHRRRH 88
                     9*********************9 PP
2zf-C2H211.50.00095187208223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C  C+k +  +s++k H++t+
  OPUNC09G10740.1 187 ACARCSKAYAVHSDYKAHLKTC 208
                      6*******************98 PP
3zf-C2H210.60.0018216234523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg++Fsr +++  H+ t+
  OPUNC09G10740.1 216 DCGRVFSRVESFIEHQDTC 234
                      9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.52E-56389No hitNo description
Gene3DG3DSA:3.30.160.602.3E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976688IPR007087Zinc finger, C2H2
SMARTSM003550.00526688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355100108138IPR015880Zinc finger, C2H2-like
SMARTSM00355230186213IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MFGSCATTAG PPPPDEATTP EPFRSLQIAT ATAGSAKKKR RPAGTPDPDA EVVSLSPRTL  60
LESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKREAG EAARKRVFVC PEPTCLHHDP  120
SHALGDLVGI KKHFRRKHSG HRQWACSRCX SSETRTCLHH DPSHALGDLV GIKKHFRRKH  180
SGHRQWACAR CSKAYAVHSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDTCNASRGE  240
AAAGVEGGNV STACGGVAVL EEKQLDQAPA AVSLSRTASS TSPSSDVVAS PVAWPGAVAP  300
AMLSPKAAAF RGRFDMAPSP PPLYDHYRGG AGAHNLELQL MPPFNAGGAA APGGMRACFY  360
AAAAAHHPTG VSQGNDASTQ LQLSIGVCSG GDSRGELMGA AGPSDEAASA AVTAKEEARE  420
QLRHAMAENE AADEARAQAR RQVELAEQEL ATARRMRHQA QVELSRAHAL RDHAVRQVNA  480
TLLQITCFSC RHKFRAAAAG PPAAMSSDVA CSYVSSVVTE GGDADEPLDV VDATRRRLQH  540
ANSMGII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-17182242363Zinc finger protein JACKDAW
5b3h_F4e-17182242363Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13640KKKRR
23641KKKRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2889640.0AK288964.1 Oryza sativa Japonica Group cDNA, clone: J090084I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610838.10.0protein indeterminate-domain 16
TrEMBLA0A0E0M1W10.0A0A0E0M1W1_ORYPU; Uncharacterized protein
STRINGOPUNC09G10740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.17e-97indeterminate(ID)-domain 14