PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G11520.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 214aa    MW: 22880.8 Da    PI: 6.9299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G11520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-143076354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h+e+Er+RR+riN  +++Lr l+P+a      +++Ka+ L ++v+YI++L
  OPUNC09G11520.1 30 RSHSEAERKRRERINAHLDTLRGLVPSA-----SRMDKAALLGEVVRYIREL 76
                     68*************************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3172776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-123076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-153079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-143079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-123179No hitNo description
SMARTSM003534.3E-133382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVAARSGDDA ELGLDGECLA AAARRTGAGR SHSEAERKRR ERINAHLDTL RGLVPSASRM  60
DKAALLGEVV RYIRELRSEA AGSAVAVPGE GNEVIMEEEE EEEMEGCNCD AGERQARRVK  120
AWVRCADRPG LMSELRDAAR SVSARAVRAE IATVGGRTRS VLKLDVAQTA AAAGGGNGAS  180
LPALQAALRT VIMSQEELLA VESYKRRHFS AHFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057551e-166AP005755.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14.
GenBankAP0149651e-166AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661325.13e-76PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0E0M2481e-147A0A0E0M248_ORYPU; Uncharacterized protein
STRINGOPUNC09G11520.11e-148(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-20bHLH family protein