PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G11790.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 358aa    MW: 37689.6 Da    PI: 6.6717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G11790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.4e-14138189155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  OPUNC09G11790.1 138 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 189
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.41E-14136193No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-17137206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.872137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MALEAVLLSR GDLFGRRRCC AMEGGGGAGG GGGWSSPFSG FEGVMDLDGG NWDAAACSSM  60
LLHGFQELEI PAAAAAAAAM APAPAPAVEP CTENAGGVGG HQEDQAAAAA VAATAVQAGR  120
RKRRRARAAK NKEEVESQRM THIAVERNRR KQMNEYLAVL RSLMPPSYAQ RGDQASIVGG  180
AINFVKELEQ LLQSLEARKG SRQCAAHNAV AAAAPFASFF TFPQYSMSAA AATAAPPAPV  240
VNEVHGRDDG GAGTTEAEAS GSKPSVVADV EVTMVESHAN LRVFSRRRPR QLLRLVVALQ  300
GHRLTVLHLN MTSAGHMVLY SFSLKVEDDC QLTSVDEIAT AAHQIIEKIQ EEQGCSLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124RKRRR
2138149RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612232.11e-175transcription factor bHLH94
RefseqXP_015612233.11e-175transcription factor bHLH94
SwissprotQ9C7T43e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0M2860.0A0A0E0M286_ORYPU; Uncharacterized protein
STRINGOPUNC09G11790.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]