PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G12310.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 1070aa    MW: 116726 Da    PI: 8.2823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G12310.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.32.4e-17798847255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OPUNC09G12310.2 798 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 847
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513757.048351381IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0024354383IPR002885Pentatricopeptide repeat
PfamPF015350.058355382IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.569382416IPR002885Pentatricopeptide repeat
PfamPF015350.15384410IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.83485521IPR002885Pentatricopeptide repeat
PfamPF130412.5E-9485534IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.2E-5488513IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.634522556IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.552557587IPR002885Pentatricopeptide repeat
PfamPF015350.039562585IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.553590624IPR002885Pentatricopeptide repeat
PfamPF130412.2E-11590636IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.6E-7592625IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.541625660IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.974661691IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.73729763IPR002885Pentatricopeptide repeat
SuperFamilySSF474591.44E-18793864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-23794867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-16794851No hitNo description
PROSITE profilePS5088816.952796846IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-15798847IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13802852IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPAPAP  60
APPPTSQNQQ QQQALPGGIG TFSISHVAGA RPVAASVVKA EPTPFVLWGQ PAAAAGHPVA  120
ALGHHHHHHH QWTLPFAGVG QVAATAARQQ QQQERKGRVG GGGFMDSGSR SSGGAGFDDD  180
DGVAARREVS SSLKERRREG RGEEGRRNPR ELMGTEMYSR CARPSHIHQL HARLLVSGRL  240
RCPSPSLAFA LALLRAACRV RASPCLRPLA RHLLDQIPRP TPLPPLLLHA AARLASRLRL  300
PSLALRYYVA LRTHHPAFLP PAPAIVDVLK SVRGRAAHAH ALRVTAHAGD IRFLHNTLIA  360
MYFACGDVQR ARLVFEGMRD RDVISWTSLI SGLVQNGSPL QGLQQFATMM HCDVRPDFVV  420
LVTVVKAFME LDNLPGAESA HSLVVKGGFH DEQDVMVTLT AMYASFGCLV AARALFDMVP  480
TQQVNVILWN AMISGYSKNG FASEAVHLFK HMQMVARNLA PDSITLRSVI FACAQLGSTE  540
LAAWMEDFVR HSEYREDVLV NTALIDMYAK SGSIAHARAV FERMHVDDRD VVVWSALITG  600
YGVQGLVNEA CTLFQDMKLA GVRPNDVTFL GLLSACNHAG AVEKGWSYFH SMKPEYGIEP  660
QHQHYACVVD LLSRAGQLDR AYQFILNMPI KPEMTVWGAL LHGCKMHGHS NMAMAECAAQ  720
HIFELEQSNA GHYVQLANMY ASAGMWSQVA GTRVTMRERG VTKATGCSFI EPELEVRMDG  780
KGGSCSGSGT DQRPSSPRSK HSATEQRRRS KINDRFQILR ELLPHSDQKR DKATFLLEVI  840
EYIRFLQEKV QKFEASVPEW NQENAKILPW SKGQNPGDDL PDPSQFIRNG SSSGYNFTGK  900
PDDNHTMVTS AAASGAQELV ETDRAASVSY RSAETPTNIT NNVTSQAQAQ WASPAGVDDC  960
AMNSEMLNNQ QLAIDEGTIS LSSQYSQQLL GTLTHALESS GVDLSQASIS VQINLGKRAV  1020
KRPGADGSSS SKELPSTSAN NENMGHQLTM LGGGTEELPH PTKRHKSGNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D9e-5133470517330PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018960.0AK101896.1 Oryza sativa Japonica Group cDNA clone:J033070P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.10.0pentatricopeptide repeat-containing protein At3g12770
TrEMBLA0A0E0M2F00.0A0A0E0M2F0_ORYPU; Uncharacterized protein
STRINGOPUNC09G12310.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-51BES1-interacting Myc-like protein 2