PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G12700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 650aa    MW: 70051.1 Da    PI: 5.7809
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G12700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.7e-33451509159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  OPUNC09G12700.1 451 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 509
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-37436511IPR003657WRKY domain
SuperFamilySSF1182906.02E-29443511IPR003657WRKY domain
PROSITE profilePS5081137.883446511IPR003657WRKY domain
SMARTSM007743.3E-38451510IPR003657WRKY domain
PfamPF031062.6E-25452509IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MICGREEREQ SFGGDGPAHL SSDHGSLMED WMPPPTPSPR TLMSSFLNED FVSGSFSNIF  60
SDHESNKPQD QFERSRELVD LSKEAPSQSV RPAFQRDASL DHSLVNPTQR SNSHGGLAER  120
RAARAGFSVP KIDTSRGGSS AVIRSPVAIP PGLSPTTLLE SPVFLYNAMA QPSPTTGTLP  180
FLMASNAKST IPPATKMDED CTFGNDTFSF QPHVGSRLPN FSVAEKGLNA CHQNQSLSSI  240
HQQESSLQSS FTAVKDTTDE KNIKTKTSDS MFGDNHSSDE QKDDETNQNG EYSMPPPNHR  300
SGVPLSHTND PEVNVLENRG SQTCHNSASL WDNAKNDCLQ DVQSEVIETR TAACLPVSTN  360
CDTSIMESQD AVDVSSTLSN EEDDRATHGT ASIECNGDGD ETDSKRRKLD ALTAATAAIT  420
TTSNIDMGAA ASRGVREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTHQ  480
GCSVRKHVER ASHDLKSVIT TYEGKHNHEV PAARNSGHGS SGSGNAPSAP QSNGSQRRQD  540
SGQASFGQFG GAAPFSSFVL PPRNQFGPSA SNFPFGMVPP GMAIPMPSLG SLAPAKMAGH  600
PSTMQGYQGL MIPEGEMKTE PMSQPGFLTV NQSSSSFQQM MNRPPFGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-33442512878Probable WRKY transcription factor 4
2lex_A2e-33442512878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0650780.0AK065078.1 Oryza sativa Japonica Group cDNA clone:J013001K23, full insert sequence.
GenBankAK1037450.0AK103745.1 Oryza sativa Japonica Group cDNA clone:J033138N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612220.10.0probable WRKY transcription factor 2
RefseqXP_015612221.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0M2L30.0A0A0E0M2L3_ORYPU; Uncharacterized protein
STRINGOPUNC09G12700.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123382233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.13e-56WRKY DNA-binding protein 34