PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G12700.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 623aa    MW: 67196 Da    PI: 5.9264
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G12700.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.3e-33424482159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  OPUNC09G12700.2 424 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 482
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-37409484IPR003657WRKY domain
SuperFamilySSF1182905.62E-29416484IPR003657WRKY domain
PROSITE profilePS5081137.883419484IPR003657WRKY domain
SMARTSM007743.3E-38424483IPR003657WRKY domain
PfamPF031062.4E-25425482IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MEDWMPPPTP SPRTLMSSFL NEDFVSGSFS NIFSDHESNK PQDQFERSRE LVDLSKEAPS  60
QSVRPAFQRD ASLDHSLVNP TQRSNSHGGL AERRAARAGF SVPKIDTSRG GSSAVIRSPV  120
AIPPGLSPTT LLESPVFLYN AMAQPSPTTG TLPFLMASNA KSTIPPATKM DEDCTFGNDT  180
FSFQPHVGSR LPNFSVAEKG LNACHQNQSL SSIHQQESSL QSSFTAVKDT TDEKNIKTKT  240
SDSMFGDNHS SDEQKDDETN QNGEYSMPPP NHRSGVPLSH TNDPEVNVLE NRGSQTCHNS  300
ASLWDNAKND CLQDVQSEVI ETRTAACLPV STNCDTSIME SQDAVDVSST LSNEEDDRAT  360
HGTASIECNG DGDETDSKRR KLDALTAATA AITTTSNIDM GAAASRGVRE PRVVVQTTSE  420
VDILDDGYRW RKYGQKVVKG NPNPRSYYKC THQGCSVRKH VERASHDLKS VITTYEGKHN  480
HEVPAARNSG HGSSGSGNAP SAPQSNGSQR RQDSGQASFG QFGGAAPFSS FVLPPRNQFG  540
PSASNFPFGM VPPGMAIPMP SLGSLAPAKM AGHPSTMQGY QGLMIPEGEM KTEPMSQPGF  600
LTVNQSSSSF QQMMNRPPFG PQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-33415485878Probable WRKY transcription factor 4
2lex_A1e-33415485878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0650780.0AK065078.1 Oryza sativa Japonica Group cDNA clone:J013001K23, full insert sequence.
GenBankAK1037450.0AK103745.1 Oryza sativa Japonica Group cDNA clone:J033138N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612220.10.0probable WRKY transcription factor 2
RefseqXP_015612221.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0M2L40.0A0A0E0M2L4_ORYPU; Uncharacterized protein
STRINGOPUNC09G12700.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-56WRKY DNA-binding protein 34