PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G13060.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 397aa    MW: 41955.1 Da    PI: 9.1464
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G13060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13327372655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  OPUNC09G13060.1 327 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 372
                      689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.243321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16324382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-12325376No hitNo description
Gene3DG3DSA:4.10.280.103.4E-15326384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10327372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-13327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MYGAPVSKDL NLPAAVVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFLPGG GGGGQLQQRP  60
ASPDHAADTV LARFLAGHGG HDIRDNKPPR PAVAAAHFVP PEDSMASQQQ QQLMYQSHQQ  120
QQQMASAMEG LYRTVSSGGT ESTAAAGNNL LRQSSSPAGF LNHLTMDNGY GNMLRAGMVG  180
AGAGGGDPRL KGQLSFSSRQ GSVMSQISEM GSEDEELAAA GGSPEAGTNG AAARGGYGGY  240
TMGSSAWEEP SPPTSLIPDN SLPTKRPRDD LPRQLSLPAS KNSSKPPSSA SAAASPEMAA  300
IEKFLQFQDA VPCKIRAKRG CATHPRSIAE RVRRTRISER IRKLQELVPN MEKQTNTADM  360
LDLAVDYIKE LQKQVKVLND SRSSCTCSAS KQKHFAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209020.0AK120902.1 Oryza sativa Japonica Group cDNA clone:J023030N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612612.10.0transcription factor bHLH130
TrEMBLA0A0E0M2R20.0A0A0E0M2R2_ORYPU; Uncharacterized protein
STRINGOPUNC09G13060.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-39bHLH family protein