PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G13830.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 399aa    MW: 41610.2 Da    PI: 4.9437
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G13830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09198245455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  OPUNC09G13830.1 198 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 245
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15192250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-10192249No hitNo description
PROSITE profilePS5088815.459194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15194249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6198245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDSDYVAGLL MTAAAAGLDL GVLDGGSGGG FLETLCGGPG FAERAARMCG GGGGGGGGGG  60
LFGLPGVASA SAGNGERGGS REGSSVSDPV WAHAGGGGGG GANARKRKAP ASGAAGKDKD  120
AVLDGSGGGS PCKVGEANAP DSKKCKTEVK PKVEEAASDG SVGDRVQKQG KGKNTKPAAE  180
PPKDYVHVRA RRGQATDSHS LAERVRREKI SQRMKVLQDL VPGCNKVVGK ALMLDEIINY  240
VQSLQQQVEV RTPPTFDRVA WSEFETLFLS MKLATVNPQL DFGNLSTLLQ KDMFQPCGPS  300
ANSIFPLESA GAAFPFCDQA DFFQSFGLGT MENQCSLDLA NTALPHTGST QYAFQKQQRD  360
LWEDNAFHYN DEQSQEDAAV SAPNFDGQLQ EADHTEIEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590360.0AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651378.10.0transcription factor BHLH089-like
TrEMBLA0A0E0M3040.0A0A0E0M304_ORYPU; Uncharacterized protein
STRINGOPUNC09G13830.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-48bHLH family protein