PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G14150.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25851.4 Da    PI: 7.9943
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G14150.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689.2e-224579135
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdae 
  OPUNC09G14150.3 45 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEL 79
                     79*******************************95 PP
2K-box81.32.2e-27781591293
            K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                      +  +s+++e+ kLk+++enLqr+qR+llGedL++L +keL+qLe+qL++sl++iRs++++ +l+q+ +lq++ +e ++ + +
  OPUNC09G14150.3  78 ELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQQMLDQLTDLQRRLEESNQLHGQ 159
                      457999*******************************************************************999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-203780IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-253793IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.2033779IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-203959IPR002100Transcription factor, MADS-box
PfamPF003197.0E-184679IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-205974IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-207495IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.24280166IPR002487Transcription factor, K-box
PfamPF014862.7E-2181153IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDRAVRVGLG FRVVVRFPPP CRKWQCGEEE EEEEIGMGRG RVELKRIENK INRQVTFAKR  60
RNGLLKKAYE LSVLCDAELV QSSRNEYLKL KARVENLQRT QRNLLGEDLG TLGIKELEQL  120
EKQLDSSLRH IRSTRTQQML DQLTDLQRRL EESNQLHGQV WEHGATLLGY ERQSPHAVQQ  180
VPPHGGGGNG FFHPLEAAAE PTLQIGFTPE QMNNSCVTAF MPTWLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-24821551995Developmental protein SEPALLATA 3
4ox0_B4e-24821551995Developmental protein SEPALLATA 3
4ox0_C4e-24821551995Developmental protein SEPALLATA 3
4ox0_D4e-24821551995Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728671e-107AK072867.1 Oryza sativa Japonica Group cDNA clone:J023143P16, full insert sequence.
GenBankFJ7509361e-107FJ750936.1 Oryza sativa clone KCS108B10 MADS-box transcription factor 8 mRNA, complete cds.
GenBankOSU321091e-107U32109.1 Oryza sativa putative MADS box protein (OsMADS24) mRNA, partial cds.
GenBankOSU788921e-107U78892.1 Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610824.11e-119MADS-box transcription factor 8 isoform X2
SwissprotQ9SAR11e-120MADS8_ORYSJ; MADS-box transcription factor 8
TrEMBLA0A0E0M3461e-165A0A0E0M346_ORYPU; Uncharacterized protein
STRINGOPUNC09G14150.31e-166(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34833469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.15e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Jang YH, et al.
    Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY.
    Plant Cell Physiol., 2009. 50(8): p. 1479-92
    [PMID:19561057]
  3. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  4. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]