PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G14320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 240aa    MW: 25718.8 Da    PI: 9.2428
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G14320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1157.8e-3681381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdke 91 
                      lppGfrFhPtdeelvv+yL++++ +++l++  vi++v d   ++Pwd+p    a+e e yfFs r+ ++a+  g   +r ++sgyWkatg++k+
  OPUNC09G14320.1   8 LPPGFRFHPTDEELVVQYLRRRALSRPLPA-AVIPDVhDAAVLDPWDFP---GAGEGEAYFFSFRQLAAASggGGGWRRRAASGYWKATGTEKP 97 
                      79****************************.8999999***********...447789*******999986223455566789*********** PP

              NAM  92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+ +      +++lvg+k+tL f +++ p+  +t Wvmheyrl
  OPUNC09G14320.1  98 VFLRgfgcggGQHLVGVKTTLLFLRAKPPS--RTGWVMHEYRL 138
                      ****9999988888**********666666..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-423172IPR003441NAC domain
PROSITE profilePS5100544.1558172IPR003441NAC domain
PfamPF023653.8E-239138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MATPRQQLPP GFRFHPTDEE LVVQYLRRRA LSRPLPAAVI PDVHDAAVLD PWDFPGAGEG  60
EAYFFSFRQL AAASGGGGGW RRRAASGYWK ATGTEKPVFL RGFGCGGGQH LVGVKTTLLF  120
LRAKPPSRTG WVMHEYRLAA AGAVAVAGQK KSGNHSCMAQ PGEWVVCRIF LKNNMSSRRR  180
TGYADGETPV TGAHGHRRQP SPSPSSSSCV TAEVSDGEEE EEEVSSGSIN GAPAASQREA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-30717414170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605090.0AK060509.1 Oryza sativa Japonica Group cDNA clone:001-019-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651404.11e-119NAC domain-containing protein 83
TrEMBLA0A0E0M3671e-175A0A0E0M367_ORYPU; Uncharacterized protein
STRINGOPUNC09G14320.21e-176(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-34NAC domain containing protein 41