PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G14440.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 300aa    MW: 33034.9 Da    PI: 6.8017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G14440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09116163455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  OPUNC09G14440.1 116 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 163
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.18E-11110167No hitNo description
SuperFamilySSF474592.88E-17110179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16112176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6116163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAGFSHLPQQ MEHGLITNHG FLFCHGHGGA ATTTAPAIPE DASMETSSVV LDTSPQDKKR  60
KPREEDSASL NSAHSKEAKE NGRKRGGKKH SRDQMEEEAP QGFIHVRARR GQATDSHSLA  120
ERVRRERISE RMRMLQALVP GCDKVTGKAL ILDEIINYVQ SLQNQVEFLS MRIASLSPVL  180
YGFGIDSDAF SDHSQKIEGM FHEAVALPAS VLNRGSSPAQ SHAIMDTSNT SPTPYTLQVQ  240
GGSNNNSLSQ DNGSYIMQTE GEPRQELFNQ VGGEGERQKA RRRDPTLTID WALYLAQLIV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661880.0AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611378.10.0transcription factor bHLH137
RefseqXP_015611379.10.0transcription factor bHLH137
TrEMBLA0A0E0M3810.0A0A0E0M381_ORYPU; Uncharacterized protein
STRINGOPUNC09G14440.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-40bHLH family protein