PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC09G14870.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 388aa MW: 41654.5 Da PI: 6.6531

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC09G14870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	191	249	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + l++e+ OPUNC09G14870.1 191 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTEN 249 9*********************************************9999888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-16	187	251	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	189	252	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-10	191	246	No hit	No description
SuperFamily	SSF57959	1.13E-10	191	242	No hit	No description
Pfam	PF00170	2.6E-9	191	249	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.59E-24	192	241	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MNRDKSPIPG DGGAGDGLPP QSTRRAGPPP PPTTTTTPPP EYDISRMPDF PTRNPGHRRA 60 HSEILSLPED LDLCAPGGGD GPSLSDENDE ELFSMFLDVE KLNSSCGASS EAEAESSAAG 120 AAATAAAACR GETAHGARPK HQHSQSMDEA MSIKAEELVG ASPGTEGMSS AEAKKAVSAA 180 KLAELALVDP KRAKRIWANR QSAARSKERK MRYIAELERK VQTLQTEATT LSAQLALLQR 240 DTSGLTTENS ELKLRLQTME QQVHLQDALN DTLKSEVQRL KVATGQMANG GGMMLNFGGM 300 PHQFGGNQQM FQNNQAMQSM LAAHQLQQLQ LHPQAQQQQV LHPQHQQQQA LHPLQAQQLQ 360 QAARDLKMKS PMGGQSQWGD GKSGSSGN

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MNRDKSPIPG DGGAGDGLPP QSTRRAGPPP PPTTTTTPPP EYDISRMPDF PTRNPGHRRA  60
HSEILSLPED LDLCAPGGGD GPSLSDENDE ELFSMFLDVE KLNSSCGASS EAEAESSAAG  120
AAATAAAACR GETAHGARPK HQHSQSMDEA MSIKAEELVG ASPGTEGMSS AEAKKAVSAA  180
KLAELALVDP KRAKRIWANR QSAARSKERK MRYIAELERK VQTLQTEATT LSAQLALLQR  240
DTSGLTTENS ELKLRLQTME QQVHLQDALN DTLKSEVQRL KVATGQMANG GGMMLNFGGM  300
PHQFGGNQQM FQNNQAMQSM LAAHQLQQLQ LHPQAQQQQV LHPQHQQQQA LHPLQAQQLQ  360
QAARDLKMKS PMGGQSQWGD GKSGSSGN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102795	0.0	AK102795.1 Oryza sativa Japonica Group cDNA clone:J033108B13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696550.1	0.0	PREDICTED: transcription factor RF2a
Swissprot	Q69IL4	0.0	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A0E0M3F0	0.0	A0A0E0M3F0_ORYPU; Uncharacterized protein
STRING	OPUNC09G14870.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	2e-70	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]