PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G15300.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 222aa    MW: 23612.7 Da    PI: 10.895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G15300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-192676256
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ GVr+++ +grWvAeI+d      +r r +lg+f+taeeAa+a+++a++ l+ge
  OPUNC09G15300.1 26 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARVLRGE 76
                     589******.7*********....4456*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.352683IPR001471AP2/ERF domain
SMARTSM003801.5E-332689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-282683IPR001471AP2/ERF domain
PfamPF008474.1E-142676IPR001471AP2/ERF domain
PRINTSPR003673.0E-82738IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-202783IPR016177DNA-binding domain
CDDcd000181.55E-233285No hitNo description
PRINTSPR003673.0E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAAQESGRMA TTTGGIVAAK ARRGRRFVGV RQRPSGRWVA EIKDSAQRVR LWLGTFDTAE  60
EAARAYDEAA RVLRGEHART NFAAHGGDAA ATASPPRARL SRNLRHVMAR AAAGSRASAA  120
CVGGEQFALA AVFRRCMHPA ATQQQCAAAD TTVHVKNAVQ PSFVVPRRTE APPPPPPPTP  180
LLLTEDVLVD FDDGLGYAGV GTALRVSSSL IVPSSFRLDD DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1426821471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239429.15e-67dehydration-responsive element-binding protein 1C
TrEMBLA0A0E0M3K31e-157A0A0E0M3K3_ORYPU; Uncharacterized protein
STRINGOPUNC09G15300.11e-158(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-13related to AP2 11