PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G15790.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 131aa    MW: 13167.6 Da    PI: 5.4711
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G15790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70282.79.6e-26456101153
           DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                       ++++P+evsseavfrcvr++ vd++e+e+aYqtavsigGhvfkGiL+d G+e
  OPUNC09G15790.1   4 VAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTAVSIGGHVFKGILHDVGPE 56 
                      5688***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.5E-23556IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.4E-23755IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MVTVAERFPR EVSSEAVFRC VRLGPVDQAE AEVAYQTAVS IGGHVFKGIL HDVGPEALAV  60
AGGSGAGASE YHFRLTGDGS SPSTAAAGDA GSGGGGNIIV SSAVVMDPYP TPGPYGAFPA  120
GTPFFHGHPR P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412850.0AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence.
GenBankAP0053140.0AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01.
GenBankAP0055670.0AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661471.17e-70PREDICTED: protein SHI RELATED SEQUENCE 1
TrEMBLA0A0E0B5P35e-84A0A0E0B5P3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0M3S48e-87A0A0E0M3S4_ORYPU; Uncharacterized protein
STRINGOGLUM09G17970.18e-85(Oryza glumipatula)
STRINGOPUNC09G15790.11e-87(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.16e-18Lateral root primordium (LRP) protein-related