PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G17100.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 842aa    MW: 92743.2 Da    PI: 6.7436
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G17100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.75.5e-29527577252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  OPUNC09G17100.1 527 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 577
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.723516597IPR003035RWP-RK domain
PfamPF020429.7E-26529577IPR003035RWP-RK domain
SuperFamilySSF542771.37E-20734830No hitNo description
SMARTSM006668.0E-18744827IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.2E-24744825No hitNo description
PROSITE profilePS5174518.398744827IPR000270PB1 domain
CDDcd064076.10E-43745825No hitNo description
PfamPF005643.3E-15745825IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MEEGDPQPSI SLARTPSEGA AAAVDLDLLE QLLSADNAWL EVAANTSRSP SFFATPSNFL  60
TDASVATTTP ANSWWIQPTG ASTSVRERFD QALAYIRETQ SDADVLVQLW VPVKGNDGKL  120
VLTTSGQPFT LDQRSNSLIQ FREVSTKYQF SADVASGSSP GLPGRVFIGR LPEWSPDVRY  180
FTSYEYPRIS HAQYLDVHGT MGLPVFERGN YSCLGVIELI MTKQKLNFTS ELNTICSALQ  240
AVNLTSTEVS SIPRTKLNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CAQQGKRGSR  300
HSDENYKYCI STIDAACYVN EPRMQSFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS  360
STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GIADFVLEFF LPTDCEVLEE QKAVLDSLSG  420
TMRSVCQTLR VVTDKEMEDE AMREMNELNS FSPRGKNKVE ELSFGDNTRE DREEASWTTL  480
VGTSQKGSDL AELHTHGILS HGGQGSSQAG DQTSKDDSKV KRRTKTEKTV SLQVLRQYFA  540
GSLKDAAKSL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL  600
NTLYKDLTNT SVSSDNNLSG SVTVPLANQN NLDFEKHQHH RLSSNIPSTS LSHSSCSQSS  660
DSSPSCSGGA TKHSPQVGAD QVKSGCLPQH SPIQTLQTEA ASINEHFSGQ EAPIDLLQDV  720
AEKANGEQHM SQSPSSPKQT AHVGMRVKVT FGSEKVRFRL KPECDFQELK QEISKRLSIV  780
DMNSLIVKYL DDDSEWVLMT CDADLHECFH VYKLADIQTI KISVHLAPSP TTRITIGHTG  840
LS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056790.0AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612116.10.0protein NLP1-like isoform X2
RefseqXP_015612117.10.0protein NLP1-like isoform X2
RefseqXP_025875998.10.0protein NLP1-like isoform X2
TrEMBLA0A0E0M4720.0A0A0E0M472_ORYPU; Uncharacterized protein
STRINGOPUNC09G17100.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein