PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G17530.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 581aa    MW: 59699.6 Da    PI: 8.9265
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G17530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05367389123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  OPUNC09G17530.1 367 FVCEVCNKGFQREQNLQLHRRGH 389
                      89*******************88 PP
2zf-C2H212.40.00048443465123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +C+k++  +s+ k H +t+
  OPUNC09G17530.1 443 WRCDKCSKRYAVQSDWKAHSKTC 465
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-6366389IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-6366389No hitNo description
PfamPF121713.8E-5367389IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0041367389IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094367389IPR007087Zinc finger, C2H2
PROSITE patternPS000280369389IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-4431464IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-6438463No hitNo description
SMARTSM00355150443463IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MPPIGAGVYG GAGNMTLGLT GMAAPQLPAG FTDQAGQPSA SAGDFLRLGG CNGAGVGGAS  60
QFDHLMASSS GSSMFRSQGS SSSSFYLANA AHHAPAQDFP EDGQSQAGQG SLLHGKPAAF  120
HDLMQLPVQH QQSSNGNLLN LGFFSGSNGV DQFNGGAGNG GGINGGQGSI VTSSGLAGNH  180
LGGGGFPSLY NSSEPAGTLP QMSATALLQK AAQMGATTSS YNASGGGASS LLSGASSHGI  240
SSGEGPTNER SYQNLMIMGS MASGGGAGVA GSFSGASGFG GAVDDGKLST RDFLVVGVVQ  300
GMSGSAAMGR RVMAQPASTS RLTGPGKHEL KWSPQSSVGL VTRPPPPDPD AEVIALSPRT  360
LMATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP KEARRRVYLC PEPSCVHHDP  420
SRALGDLTGI KKHYCRKHGE KKWRCDKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR  480
RDSFITHRAF CDALAQENAR MPPIGAGVYG GAGNMTLGLT GMAAPQLPAG FTDQAGQPSA  540
SAGDVLRLAG GNGAGIKISQ ETAGKWVSFD VKSSCEGLNP D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35439501365Zinc finger protein JACKDAW
5b3h_F5e-35439501365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612461.11e-149protein indeterminate-domain 5, chloroplastic
RefseqXP_015612462.11e-149protein indeterminate-domain 5, chloroplastic
RefseqXP_015612463.11e-149protein indeterminate-domain 5, chloroplastic
RefseqXP_015612465.11e-149protein indeterminate-domain 5, chloroplastic
RefseqXP_015612466.11e-149protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0E0M4D10.0A0A0E0M4D1_ORYPU; Uncharacterized protein
STRINGOPUNC09G17530.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-107indeterminate(ID)-domain 5