PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC09G18510.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 499aa MW: 56720.2 Da PI: 5.2229

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC09G18510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	120.8	1.8e-37	30	102	4	76
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 gr + +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ s+++ OPUNC09G18510.1 30 GRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSVSQQQ 102 6888999***********************************************************9766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.4E-34	30	101	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.21E-156	118	495	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.7E-101	121	319	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	3.1E-62	127	320	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.2E-35	158	172	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.2E-35	179	197	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.2E-35	201	222	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	205	213	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00750	6.2E-35	294	316	IPR001554	Glycoside hydrolase, family 14
Gene3D	G3DSA:3.20.20.80	2.5E-64	320	494	IPR013781	Glycoside hydrolase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0009570	Cellular Component	chloroplast stroma
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MQQQAMEEDG VKEEEEEEEE EEEQQQVRRG RGRAREEKER TKLRERQRRA ITARILAGLR 60 RHGNYNLRVR ADINEVIAAL AREAGWVVLP DGTTFPSVSQ QQLQVPDLLP PRPPERDFAG 120 TPYVPVYVML PLGVVNGNGE VVDADVLVGQ LRVLKAAGVD GVMVDCWWGN VEAHRPQEYN 180 WTGYKRLFHM IRELKLKLQV VMSFHECGGN VGDDVSIPLP HWVTEIGRSN PDIYFTDRAG 240 RRNTECLSWG IDKERVLQGR TGVEVYFDYM RSFRVEFDEY FEDGIISEIE IGLGACGELR 300 YPSYPAKHGW KYPGIGEFQV LVDHADRVLM LARLAFEGSN IAVKVSGVHW WYKTASHAAE 360 LTAGFYNPCN RDGYASIAAV LKKHGAALNF TCVELRTMDQ HEVFPEAYAD PEGLVWQVLN 420 AAWDAGIPVA SENALPCYDR DGFNKILENA KPLNDPDGRH LLGFTYLRLG KVLFERANFL 480 EFERFVKRMH GEAVLDLQV

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MQQQAMEEDG VKEEEEEEEE EEEQQQVRRG RGRAREEKER TKLRERQRRA ITARILAGLR  60
RHGNYNLRVR ADINEVIAAL AREAGWVVLP DGTTFPSVSQ QQLQVPDLLP PRPPERDFAG  120
TPYVPVYVML PLGVVNGNGE VVDADVLVGQ LRVLKAAGVD GVMVDCWWGN VEAHRPQEYN  180
WTGYKRLFHM IRELKLKLQV VMSFHECGGN VGDDVSIPLP HWVTEIGRSN PDIYFTDRAG  240
RRNTECLSWG IDKERVLQGR TGVEVYFDYM RSFRVEFDEY FEDGIISEIE IGLGACGELR  300
YPSYPAKHGW KYPGIGEFQV LVDHADRVLM LARLAFEGSN IAVKVSGVHW WYKTASHAAE  360
LTAGFYNPCN RDGYASIAAV LKKHGAALNF TCVELRTMDQ HEVFPEAYAD PEGLVWQVLN  420
AAWDAGIPVA SENALPCYDR DGFNKILENA KPLNDPDGRH LLGFTYLRLG KVLFERANFL  480
EFERFVKRMH GEAVLDLQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6f9h_A	1e-120	123	499	9	449	Beta-amylase
6f9j_A	1e-120	123	499	9	449	Beta-amylase
6f9l_A	1e-120	123	499	9	449	Beta-amylase
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Low beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269\|PubMed:18390594, ECO:0000269\|PubMed:19664588}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly by cold stress. {ECO:0000269\|PubMed:16297066}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070300	0.0	AK070300.1 Oryza sativa Japonica Group cDNA clone:J023048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026656977.1	0.0	beta-amylase 2, chloroplastic isoform X3
Swissprot	O65258	0.0	BAM2_ARATH; Beta-amylase 2, chloroplastic
TrEMBL	A0A0E0M4R0	0.0	A0A0E0M4R0_ORYPU; Beta-amylase
STRING	OPUNC09G18510.2	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	1e-176	beta-amylase 7

Publications ? help Back to Top
Smith AM,Zeeman SC,Smith SM Starch degradation. Annu Rev Plant Biol, 2005. 56: p. 73-98 [PMID:15862090] Lundmark M,Cavaco AM,Trevanion S,Hurry V Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant Cell Environ., 2006. 29(9): p. 1703-14 [PMID:16913860] Li J, et al. Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein. Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8 [PMID:19664588] Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM Starch turnover in developing oilseed embryos. New Phytol., 2010. 187(3): p. 791-804 [PMID:20546137] Monroe JD, et al. Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics. Plant Physiol., 2017. 175(4): p. 1525-1535 [PMID:29066669]