PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC09G18580.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 553aa MW: 61016.5 Da PI: 6.1338

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC09G18580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	27	48	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H OPUNC09G18580.1 27 KCTKCPREFCSSINYRRHTRVH 48 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.286	26	48	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHTRVHRR TLQIEKDFLK 60 NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG 120 NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN 180 AVACTSYMLE QKLFLKWLYI KHQVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK 240 RMKKLRQKEQ RLKDFKDDDV TDRLPGTVDG TTDSSGVLSL KEATSDPGLY EQEDTQLPTP 300 VALEDNSSFA DLPVEHDIRD PGHEVNSSVI LSQQVLSRHR VGRTENLAQN SFASGGSAIG 360 SKHPASARHS HYRGTNAGTV SNRNKTWTWK VRTEIEGHSP KDELNIDDGQ EIVLDKKSRV 420 LIGSISVAIE DGSECLEDNQ YSKEYPTPAS QLNIGNHPVT KVMQPVNHGD EGNGYNAHND 480 IDVNITPTAQ DHSSSSVMTD GKSCSSCCNA GLAEGGGLRG AMFSSKEAAA FLSQRWKEAI 540 SADHVKLVLC PEG

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHTRVHRR TLQIEKDFLK  60
NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG  120
NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN  180
AVACTSYMLE QKLFLKWLYI KHQVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK  240
RMKKLRQKEQ RLKDFKDDDV TDRLPGTVDG TTDSSGVLSL KEATSDPGLY EQEDTQLPTP  300
VALEDNSSFA DLPVEHDIRD PGHEVNSSVI LSQQVLSRHR VGRTENLAQN SFASGGSAIG  360
SKHPASARHS HYRGTNAGTV SNRNKTWTWK VRTEIEGHSP KDELNIDDGQ EIVLDKKSRV  420
LIGSISVAIE DGSECLEDNQ YSKEYPTPAS QLNIGNHPVT KVMQPVNHGD EGNGYNAHND  480
IDVNITPTAQ DHSSSSVMTD GKSCSSCCNA GLAEGGGLRG AMFSSKEAAA FLSQRWKEAI  540
SADHVKLVLC PEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	244	ERKRMKKL
2	242	252	KKLRQKEQRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102035	0.0	AK102035.1 Oryza sativa Japonica Group cDNA clone:J033081C08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611822.1	0.0	uncharacterized protein LOC4347911
Refseq	XP_015611823.1	0.0	uncharacterized protein LOC4347911
TrEMBL	A0A0E0M4R9	0.0	A0A0E0M4R9_ORYPU; Uncharacterized protein
STRING	OPUNC09G18580.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-83	C2H2-like zinc finger protein