PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC10G00240.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 259aa MW: 28693.7 Da PI: 7.9376

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC10G00240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.5e-11	108	154	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f +L +++P+ +K +K+++L ++eY+++L+ OPUNC10G00240.1 108 EHVIAERKRREKMHQQFTTLASIVPEI-----TKTDKVSVLGSTIEYVHHLR 154 6999********************7.....6***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.684	104	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.03E-15	108	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-9	108	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	108	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.27E-10	109	158	No hit	No description
SMART	SM00353	1.7E-12	110	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MACRTGKNHK ENDDDPRELE HLDPLSMQQL AESLANELFN QPQEHPSLRV LPFVGDINKP 60 EGHTPAAAAI CDSFFSLTNG SSSSSLKFCS PPSEMKRGGR RATSSVQEHV IAERKRREKM 120 HQQFTTLASI VPEITKTDKV SVLGSTIEYV HHLRERVKIL QDIQSTQPPI SGNKDDVEIK 180 VEANLRGTTL LLRVVCPEKK GVLIKLLTQL DKLGLSTMNT NVVPFADSSL NITITAQIDN 240 GSCTTVELVK NLKSTLRNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	117	ERKRRE
2	113	118	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069324	2e-77	AC069324.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0071K19, complete sequence.
GenBank	AC145127	2e-77	AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
GenBank	AP014966	2e-77	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	2e-77	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613484.1	1e-151	transcription factor bHLH18
TrEMBL	A0A0E0M4Y0	0.0	A0A0E0M4Y0_ORYPU; Uncharacterized protein
STRING	OPUNC10G00240.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13896	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-25	bHLH family protein