PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G04340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 334aa    MW: 37175.2 Da    PI: 5.546
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G04340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC76.15e-2431130298
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      +++fw      ie+++  ++  lP+ar+k++++a +d  m+sa++P++++k celf+ el lr+w+ a++ +r+ +  +dia+a+t t+ + fl
  OPUNC10G04340.1  31 MEKFWRMSheqIEESAGNQELILPIARVKNVIRAKQDDMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHFL 124
                      78899876222555555556679*********************************************************************** PP

            NF-YC  93 vdivpr 98 
                        +v  
  OPUNC10G04340.1 125 AKVVRD 130
                      988764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.37E-1749129IPR009072Histone-fold
PfamPF008081.7E-1053115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-2053128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPIPAKEGVE HNQEDDTFSR LQLLAQQRDA MEKFWRMSHE QIEESAGNQE LILPIARVKN  60
VIRAKQDDMM LSADTPAFVT KLCELFVQEL ILRAWVCANS HNREIILGTD IAEAITTTES  120
YHFLAKVVRD HQAIGRNIQD IGVSGWKRHK LDEMTSVYHP PQAVQVIDLA SHPPSVPVCS  180
PIGQMGTQHT PSTHVLMMQG ESLRKASKEK NPLNEVMVPT NKVSMKNSYA VPSGGCATSS  240
DVAIDSQKGE TAKVFSSQNA CPSLEDNYVI PIPAGHGYSF RTPAEAIVNQ LHQEQQNFIS  300
QDAIVGEKIL SNESLEKSMH MDEDLLFPEK DLPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-1340128593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972780.0AC097278.6 Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete sequence.
GenBankAK2889610.0AK288961.1 Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613386.10.0uncharacterized protein LOC4348238
TrEMBLA0A0E0M6870.0A0A0E0M687_ORYPU; Uncharacterized protein
STRINGOPUNC10G04340.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-19nuclear factor Y, subunit C2