PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G07050.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 317aa    MW: 33679 Da    PI: 7.0899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G07050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.5e-1596147155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i+  A++Y+++L+
  OPUNC10G07050.1  96 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YSQRGDQASIVGGAINYVRELE 147
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.9E-1594151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-1594151No hitNo description
SuperFamilySSF474592.62E-1795157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.4595146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1296147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MALEAVVYSH GGHFGGYGGL MGGAPAAWDV FAAAGGGSWD DPGLFAASLD VMQDVDEWEV  60
DQHASSSSSK VAAAAAGKRK RRRAKAVKNR EEIESQRMTH IAVERNRRRQ MNEYLAVLRS  120
LMPPSYSQRG DQASIVGGAI NYVRELEQLL QTLEVKRNIK DHIDGAGAGG ESPSPFSGFF  180
AFPQYSISGH VGGSGGDARS RIVKPAETTT VAGGVVGGGA AIADIEASMV EGHASVKVQA  240
RRRPRQLIKL VAGLHQLGLT TLHLNVTTVA AMAMYSFSLK VEDGCKLGSV EEIATAVHEI  300
LERIQEEQAL ADAKTNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782KRKRRR
27882RKRRR
396107RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588090.0AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613301.11e-155transcription factor bHLH96
SwissprotQ9C7T41e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0M7370.0A0A0E0M737_ORYPU; Uncharacterized protein
STRINGOPUNC10G07050.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]