PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G09700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 1784aa    MW: 197433 Da    PI: 8.49
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G09700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.63.3e-2698184371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OPUNC10G09700.1  98 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnfaspdpenpntpqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 184
                      689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-4392190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.9E-3796184IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.17E-1999185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.0E-2399184IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144589.98E-38189292IPR014889Transcription factor DP, C-terminal
SMARTSM011381.7E-63191347IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.1E-39191319No hitNo description
PfamPF087811.7E-38192320IPR014889Transcription factor DP, C-terminal
Gene3DG3DSA:1.10.630.106.3E-38373610IPR001128Cytochrome P450
SuperFamilySSF482644.06E-44376618IPR001128Cytochrome P450
PfamPF000671.6E-16395606IPR001128Cytochrome P450
SuperFamilySSF482644.06E-44645688IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.108.4E-7649694IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.103.5E-1227541216IPR001128Cytochrome P450
SuperFamilySSF482645.63E-1167571213IPR001128Cytochrome P450
PfamPF000671.3E-927601212IPR001128Cytochrome P450
PRINTSPR004639.2E-30789808IPR002401Cytochrome P450, E-class, group I
PRINTSPR004639.2E-30813834IPR002401Cytochrome P450, E-class, group I
PRINTSPR004639.2E-30907925IPR002401Cytochrome P450, E-class, group I
PRINTSPR004639.2E-3010201037IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.1E-610311048IPR001128Cytochrome P450
PRINTSPR004639.2E-3010401066IPR002401Cytochrome P450, E-class, group I
PRINTSPR004639.2E-3010841102IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.1E-610851096IPR001128Cytochrome P450
PRINTSPR004639.2E-3011251149IPR002401Cytochrome P450, E-class, group I
PRINTSPR004639.2E-3011611171IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.1E-611621171IPR001128Cytochrome P450
PROSITE patternPS00086011641173IPR017972Cytochrome P450, conserved site
PRINTSPR004639.2E-3011711194IPR002401Cytochrome P450, E-class, group I
Gene3DG3DSA:1.10.630.101.1E-12413011778IPR001128Cytochrome P450
SuperFamilySSF482641.01E-11613041778IPR001128Cytochrome P450
PfamPF000673.2E-9113071759IPR001128Cytochrome P450
PROSITE patternPS00086017141723IPR017972Cytochrome P450, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 1784 aa     Download sequence    Send to blast
MVSGAAHSAS TSGGGGGGSE GSPTGRAAPG MQGGGGGGGG ATPAASASAS TPASETTVAR  60
RLDGLDIQGD DAPSSQPATS KKKKRGPGTR ATGPDKGGRG LRQFSMKVCE KVESKGRTTY  120
NEVADELVAE FADPNNNFAS PDPENPNTPQ FDEKNIRRRV YDALNVLMAM DIISKDKKEI  180
QWKGLPRTSM SDVEELKTEI IGLKGRIDKK NAYLQELEDQ FVGLQNLAQR NEQLYGSGNA  240
PSGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDSFVLK ALGFSGKEPD  300
DTQARVGNGG ECSTTPMYHQ SPQVVRPNGV RLPTSPPIPG PRNTLEYKLL LLALAVSVLI  360
AVAISKLISY ATKPRLNLPP GPWTLPVIGS IHHLVWLGEV PAVVVSSPEA AEDVLMSQDL  420
AFADRYVSTT IATIYLGGRD LAFAPYGERW RQLRKLCTQQ LLTAARVRSF RRIREEEVAR  480
LVRDLAASAA AGEAVNLTAK MAELVNDIVV RCSIDNEQFL DALRIALDQT TWLTVADVFP  540
SSKLARMLGT APRKALASRK KIERILEQTI QERKQIKERS TGTDETAAGN ECFLDVLLRL  600
QKERNTPIPI TNETMMLLLP SQRNIKHHSK LDHGRGHQVA KSNGKGAFEV RRAFQGKNTI  660
TKDDVVKLSY LKMVTKESLR MHCPVPLLGP ESEKIDTREA PGLVEPKRTS LYLHPVTRVA  720
PSTPVTLMLA LAVSVSVLLV VVVVISKLVS YATRPRLNLP PGPWTLPVIG SLHHLVRSPS  780
IHRSMRALAE KHGHLMQIRL GEVFAVVVSS PEAAEQILKS QDITFADRFL STTIGMITFG  840
GNDLAFAPYG ERWRQLRKLC TLELLTAARV RSFRRIREEE VARLVRDLAT SAAAGEAVNM  900
SDKMAKLTND IVVRCCVGGR TKYRDEFLDA LRVALDQTTW LTVADVFPSS KLAHMLGTAP  960
RRALAGRKKM EHILEQIIQE RKEIMDRSSH GGDGEAVNTN ECFVDVLLRL QKDGNTPIPI  1020
TNEIIVDIFS GGSETSSITL NWTMAELVRK PRVIAKAHVE VRQTFQGKNT ITEDDGVNRL  1080
TYLKMVIKES LRMHCPVPLL GPRKCREKCK VMDYDIPKNT TILVNAWAIC RDPTYWDDAE  1140
EFKPERFKNN SIGYKGSNFE FLPFGSGRRM CAGMNLGIAN VELPLASLLY YFDWKLPDGM  1200
LPEDVDMRDA PGLLVKDGWR QPSICCNISG GHLYAGNHIV VCGRIGHRIS DPARHRVFLV  1260
FSVMFFSRVA ACCIWWHLLL TLAVSVVFIL ISKLVYRDTN KPRLNLPPGP WTLPVIGSIH  1320
HLMRSPSIHR SMRSLAEKHG PLMQVWLGEV PAVVVSSTEA AEEVLKNHDV RFADRFISTT  1380
LGTITFGGND LAFAPYGERW RQLKMLCTQE LLTAARVRSF RRIREEEVAR LVQDLAAGDG  1440
EVAVNLSEKI ARLVNDIMVR CCVGGRSKHR DEFLDALCTA LSQTSWLTVA DLFPSSKLAR  1500
MVGTAPRRAL ASRKKMEHIL EQIIQEREEM MDRSGDGGDS EAVPGNECFL DVLLRLQKEG  1560
DTPIPITMEL IVMLLFDIVS GGTETSTIVL NWTMAELIHT PRVMAKAHAE VRQTFQAKST  1620
ITEDDGISGL TYLKMVIKES LRMHCPVPLL GPRRCRETCK VMGYDILKDT TVFVNAWAMC  1680
RSSTYWDDAE EFKPERFENK CIDYKGSSFE FVPFGSGRRM CAGMNLGIAD VELPLASLLY  1740
HFDWKLPDGM LPKDIDMQEA PGLFGGRRTS LIICPITRVA PSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A3e-7173817786494Ferruginol synthase
5ym3_A3e-7173817786494Ferruginol synthase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEnzyme of the diterpenoid metabolism involved in the biosynthesis of antibacterial oryzalides such as phytocassane (PubMed:21985968). Catalyzes the hydroxylation of ent-cassa-12,15-diene to form ent-3beta-hydroxycassa-12,15-dien-2-one (PubMed:25758958). {ECO:0000269|PubMed:21985968, ECO:0000269|PubMed:25758958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245510.0AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614009.10.0ent-cassadiene hydroxylase-like
SwissprotQ6YV880.0C71Z7_ORYSJ; Ent-cassadiene hydroxylase
TrEMBLA0A0E0M8180.0A0A0E0M818_ORYPU; Uncharacterized protein
STRINGOPUNC10G09700.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-120Transcription factor DP
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhong L,Wang K,Tan J,Li W,Li S
    Putative cytochrome P450 genes in rice genome (Oryza sativa L. ssp. indica) and their EST evidence.
    Sci. China, C, Life Sci., 2002. 45(5): p. 512-7
    [PMID:18759039]
  3. Wu Y,Hillwig ML,Wang Q,Peters RJ
    Parsing a multifunctional biosynthetic gene cluster from rice: Biochemical characterization of CYP71Z6 & 7.
    FEBS Lett., 2011. 585(21): p. 3446-51
    [PMID:21985968]
  4. Kitaoka N,Wu Y,Xu M,Peters RJ
    Optimization of recombinant expression enables discovery of novel cytochrome P450 activity in rice diterpenoid biosynthesis.
    Appl. Microbiol. Biotechnol., 2015. 99(18): p. 7549-58
    [PMID:25758958]