PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G09700.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 1747aa    MW: 193321 Da    PI: 8.3108
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G09700.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.94.7e-2598210371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...............................................dvknkrRRiYD 48 
                      +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                                               d+kn+rRR+YD
  OPUNC10G09700.3  98 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnfaspdpenpntvkkydnspwsllcyficnadyvnatqpqfDEKNIRRRVYD 188
                      689*******...*****999************************************************************************* PP

          E2F_TDP  49 ilNVLealnliekkekneirwkg 71 
                      +lNVL+a+++i+k +k+ei+wkg
  OPUNC10G09700.3 189 ALNVLMAMDIISK-DKKEIQWKG 210
                      *************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-4192143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-3196210IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-2299210IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.24E-1599124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.24E-15158211IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-41177216IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.34E-37215318IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.07E-39217345No hitNo description
SMARTSM011381.7E-63217373IPR014889Transcription factor DP, C-terminal
PfamPF087811.6E-38218346IPR014889Transcription factor DP, C-terminal
Gene3DG3DSA:1.10.630.106.1E-38399636IPR001128Cytochrome P450
SuperFamilySSF482643.94E-44402644IPR001128Cytochrome P450
PfamPF000671.6E-16421632IPR001128Cytochrome P450
SuperFamilySSF482643.94E-44671714IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.108.2E-7675720IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.101.5E-1227801251IPR001128Cytochrome P450
SuperFamilySSF482642.49E-1167831246IPR001128Cytochrome P450
PfamPF000671.1E-927861238IPR001128Cytochrome P450
PRINTSPR004637.7E-30815834IPR002401Cytochrome P450, E-class, group I
PRINTSPR004637.7E-30839860IPR002401Cytochrome P450, E-class, group I
PRINTSPR004637.7E-30933951IPR002401Cytochrome P450, E-class, group I
PRINTSPR004637.7E-3010461063IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.0E-610571074IPR001128Cytochrome P450
PRINTSPR004637.7E-3010661092IPR002401Cytochrome P450, E-class, group I
PRINTSPR004637.7E-3011101128IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.0E-611111122IPR001128Cytochrome P450
PRINTSPR004637.7E-3011511175IPR002401Cytochrome P450, E-class, group I
PRINTSPR004637.7E-3011871197IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.0E-611881197IPR001128Cytochrome P450
PROSITE patternPS00086011901199IPR017972Cytochrome P450, conserved site
PRINTSPR004637.7E-3011971220IPR002401Cytochrome P450, E-class, group I
Gene3DG3DSA:1.10.630.101.0E-12412641741IPR001128Cytochrome P450
SuperFamilySSF482649.69E-11712671741IPR001128Cytochrome P450
PfamPF000673.1E-9112701722IPR001128Cytochrome P450
PROSITE patternPS00086016771686IPR017972Cytochrome P450, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 1747 aa     Download sequence    Send to blast
MVSGAAHSAS TSGGGGGGSE GSPTGRAAPG MQGGGGGGGG ATPAASASAS TPASETTVAR  60
RLDGLDIQGD DAPSSQPATS KKKKRGPGTR ATGPDKGGRG LRQFSMKVCE KVESKGRTTY  120
NEVADELVAE FADPNNNFAS PDPENPNTVK KYDNSPWSLL CYFICNADYV NATQPQFDEK  180
NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG LPRTSMSDVE ELKTEIIGLK GRIDKKNAYL  240
QELEDQFVGL QNLAQRNEQL YGSGNAPSGG VALPFILVQT RPHATVEVEI SEDMQLVHFD  300
FNSTPFELHD DSFVLKALGF SGKEPDDTQA RVGNGGECST TPMYHQSPQV VRPNGVRLPT  360
SPPIPGPRNT LEYKLLLLAL AVSVLIAVAI SKLISYATKP RLNLPPGPWT LPVIGSIHHL  420
VWLGEVPAVV VSSPEAAEDV LMSQDLAFAD RYVSTTIATI YLGGRDLAFA PYGERWRQLR  480
KLCTQQLLTA ARVRSFRRIR EEEVARLVRD LAASAAAGEA VNLTAKMAEL VNDIVVRCSI  540
DNEQFLDALR IALDQTTWLT VADVFPSSKL ARMLGTAPRK ALASRKKIER ILEQTIQERK  600
QIKERSTGTD ETAAGNECFL DVLLRLQKER NTPIPITNET MMLLLPSQRN IKHHSKLDHG  660
RGHQVAKSNG KGAFEVRRAF QGKNTITKDD VVKLSYLKMV TKESLRMHCP VPLLGPESEK  720
IDTREAPGLV EPKRTSLYLH PVTRVAPSTP VTLMLALAVS VSVLLVVVVV ISKLVSYATR  780
PRLNLPPGPW TLPVIGSLHH LVRSPSIHRS MRALAEKHGH LMQIRLGEVF AVVVSSPEAA  840
EQILKSQDIT FADRFLSTTI GMITFGGNDL AFAPYGERWR QLRKLCTLEL LTAARVRSFR  900
RIREEEVARL VRDLATSAAA GEAVNMSDKM AKLTNDIVVR CCVGGRTKYR DEFLDALRVA  960
LDQTTWLTVA DVFPSSKLAH MLGTAPRRAL AGRKKMEHIL EQIIQERKEI MDRSSHGGDG  1020
EAVNTNECFV DVLLRLQKDG NTPIPITNEI IVDIFSGGSE TSSITLNWTM AELVRKPRVI  1080
AKAHVEVRQT FQGKNTITED DGVNRLTYLK MVIKESLRMH CPVPLLGPRK CREKCKVMDY  1140
DIPKNTTILV NAWAICRDPT YWDDAEEFKP ERFKNNSIGY KGSNFEFLPF GSGRRMCAGM  1200
NLGIANVELP LASLLYYFDW KLPDGMLPED VDMRDAPGLL LLLTLAVSVV FILISKLVYR  1260
DTNKPRLNLP PGPWTLPVIG SIHHLMRSPS IHRSMRSLAE KHGPLMQVWL GEVPAVVVSS  1320
TEAAEEVLKN HDVRFADRFI STTLGTITFG GNDLAFAPYG ERWRQLKMLC TQELLTAARV  1380
RSFRRIREEE VARLVQDLAA GDGEVAVNLS EKIARLVNDI MVRCCVGGRS KHRDEFLDAL  1440
CTALSQTSWL TVADLFPSSK LARMVGTAPR RALASRKKME HILEQIIQER EEMMDRSGDG  1500
GDSEAVPGNE CFLDVLLRLQ KEGDTPIPIT MELIVMLLFD IVSGGTETST IVLNWTMAEL  1560
IHTPRVMAKA HAEVRQTFQA KSTITEDDGI SGLTYLKMVI KESLRMHCPV PLLGPRRCRE  1620
TCKVMGYDIL KDTTVFVNAW AMCRSSTYWD DAEEFKPERF ENKCIDYKGS SFEFVPFGSG  1680
RRMCAGMNLG IADVELPLAS LLYHFDWKLP DGMLPKDIDM QEAPGLFGGR RTSLIICPIT  1740
RVAPSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A4e-7176417411494Ferruginol synthase
5ym3_A4e-7176417411494Ferruginol synthase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEnzyme of the diterpenoid metabolism involved in the biosynthesis of antibacterial oryzalides such as phytocassane (PubMed:21985968). Catalyzes the hydroxylation of ent-cassa-12,15-diene to form ent-3beta-hydroxycassa-12,15-dien-2-one (PubMed:25758958). {ECO:0000269|PubMed:21985968, ECO:0000269|PubMed:25758958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874790.0AK287479.1 Oryza sativa Japonica Group cDNA, clone: J043023O14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614009.10.0ent-cassadiene hydroxylase-like
SwissprotQ6YV880.0C71Z7_ORYSJ; Ent-cassadiene hydroxylase
TrEMBLA0A0E0M8200.0A0A0E0M820_ORYPU; Uncharacterized protein
STRINGOPUNC10G09700.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-117Transcription factor DP
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhong L,Wang K,Tan J,Li W,Li S
    Putative cytochrome P450 genes in rice genome (Oryza sativa L. ssp. indica) and their EST evidence.
    Sci. China, C, Life Sci., 2002. 45(5): p. 512-7
    [PMID:18759039]
  3. Wu Y,Hillwig ML,Wang Q,Peters RJ
    Parsing a multifunctional biosynthetic gene cluster from rice: Biochemical characterization of CYP71Z6 & 7.
    FEBS Lett., 2011. 585(21): p. 3446-51
    [PMID:21985968]
  4. Kitaoka N,Wu Y,Xu M,Peters RJ
    Optimization of recombinant expression enables discovery of novel cytochrome P450 activity in rice diterpenoid biosynthesis.
    Appl. Microbiol. Biotechnol., 2015. 99(18): p. 7549-58
    [PMID:25758958]