PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G13240.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 301aa    MW: 32150 Da    PI: 4.4443
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G13240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13351148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+l+++  +++G g +W + +  +g++R++ +c+srw++yl
  OPUNC10G13240.1  3 KGKWSKEEDDLIKNHMEKYGIGrSWQALSDALGLRRCGRSCRSRWLNYL 51
                     79******************999************************97 PP
2Myb_DNA-binding31.15.4e-1058101247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g +++ E+ ++ +   + G+  W++Ia+ ++ gRt+  +k++w++ 
  OPUNC10G13240.1  58 GDFSPSEERIICKMYSKRGSS-WSAIAAQLP-GRTDLAVKNYWNST 101
                      679****************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.836155IPR017930Myb domain
SuperFamilySSF466891.95E-24298IPR009057Homeodomain-like
SMARTSM007173.4E-11253IPR001005SANT/Myb domain
PfamPF002493.6E-12351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-19458IPR009057Homeodomain-like
PROSITE profilePS5129414.17656106IPR017930Myb domain
SMARTSM007171.3E-956104IPR001005SANT/Myb domain
PfamPF002493.8E-958101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2059105IPR009057Homeodomain-like
CDDcd001674.40E-760102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKKGKWSKEE DDLIKNHMEK YGIGRSWQAL SDALGLRRCG RSCRSRWLNY LRPGLKHGDF  60
SPSEERIICK MYSKRGSSWS AIAAQLPGRT DLAVKNYWNS TLKKRFPATA AAATTARSPA  120
ASASATTSSD DDDDVDDAIP PGLALVVSSE GGSTTTNAAA GELTPYSVSS PTAIADAAEE  180
EEEPIAAVPI STCILALPPP PPPPPPKPSD ATGGEVSIPC FPFSPLPFIE PDLPELTWTT  240
DLDDIAAGFT AAAAAAADDD DDACRYPKRP LPITPDSPRL PKLPSITGFD DVQSFLSWFD  300
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-23110625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798881e-162AC079888.10 Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence.
GenBankAP0149661e-162AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876753.11e-110transcription factor MYB30-like
TrEMBLA0A0E0M9C40.0A0A0E0M9C4_ORYPU; Uncharacterized protein
STRINGOPUNC10G13240.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.13e-30myb domain protein 87