PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G13730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 323aa    MW: 33662.2 Da    PI: 8.8229
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G13730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY81.82.1e-2563118358
            YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqlla 58 
                      v+s  eq+Cyv+C +C+t+l+vsvPs+slfk+vtvrCGhC+sll+vn++      +
  OPUNC10G13730.1  63 VDSEQEQLCYVHCHYCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVNMRGLLLPAT 118
                      67889****************************************88876554333 PP
2YABBY130.13e-40214277109170
            YABBY 109 vprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      +pr+    ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  OPUNC10G13730.1 214 SPRTNTavINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 277
                      4554443489****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.0E-6266277IPR006780YABBY protein
SuperFamilySSF470958.51E-8219270IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.9E-4226269IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSSSSSSSSA SSSSAAAAAS AAAFRPAIVQ REQQVEEKFP AAAAAAAMRE MVLPPVVAAA  60
AAVDSEQEQL CYVHCHYCDT VLVVSVPSSS LFKTVTVRCG HCSSLLTVNM RGLLLPATSA  120
ATVAAAPPPP PPPPHFPHSL NLTPANPPHH HSLLDEISTA NSTTQLLLEQ HGLGGLMASA  180
ASCRNNNAPP PPPPPLAAAA AATSQGKGAA KEPSPRTNTA VINRPPEKRQ RVPSAYNRFI  240
KDEIQRIKAG NPDISHREAF SAAAKNWAHF PHIHFGLMPD HQGLKKTSLL PQDHQRKDGL  300
LKEGLYAAAA AAAAAANMGV APY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740150.0AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613818.11e-160protein YABBY 3 isoform X1
SwissprotQ8L5561e-161YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A0E0M9I80.0A0A0E0M9I8_ORYPU; Uncharacterized protein
STRINGOPUNC10G13730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-44YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]