PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G14000.4
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1736aa    MW: 189908 Da    PI: 7.4436
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G14000.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-0617161735525
                       --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaH 25  
                       +Cr ++++G+C+ G +C+F H
  OPUNC10G14000.4 1716 ICR-YYENGYCRKGTSCQFLH 1735
                       799.6666************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.6E-7135192IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.9E-8135196IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.52140206IPR019787Zinc finger, PHD-finger
CDDcd155681.22E-19142187No hitNo description
SMARTSM002491.9E-6142188IPR001965Zinc finger, PHD-type
PROSITE patternPS013590143203IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475924.14E-20358438IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.1E-24359440IPR003121SWIB/MDM2 domain
PfamPF022013.3E-15363436IPR003121SWIB/MDM2 domain
SMARTSM007198.9E-36494590IPR004343Plus-3 domain
SuperFamilySSF1590421.57E-22494608IPR004343Plus-3 domain
PROSITE profilePS5136014.531494613IPR004343Plus-3 domain
PfamPF031265.7E-12499579IPR004343Plus-3 domain
SuperFamilySSF552773.66E-14730788IPR003169GYF domain
PROSITE profilePS5082914.231733785IPR003169GYF domain
SMARTSM004448.6E-12734787IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.7E-14735788IPR003169GYF domain
PfamPF022132.4E-9736777IPR003169GYF domain
PROSITE profilePS5010313.73217111736IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-517141735IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-517161735IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1736 aa     Download sequence    Send to blast
MDGGTGQGAE LLSPGEAEWP PELRLPPPPP PMPPPPPLEP APPSTPQLPS PPPPTLPGGP  60
GAVATRKEAS SSPTRHAEGF DDSHFLGSIM GAPAHQHQQP PAVGPPVVVK RKRGRPPKNR  120
DGAAPPPAPP KPVKEEDDED MVCFICFDGG NLVVCDKKGC TKVYHPACIK RDESFFRSRA  180
KWTCGWHLCS TCEKAVQYMC YTCTYSLCKG CIKQKPVKFF GVRGNKGFCD TCYSTILLIE  240
SKDDRAKAKV DFDDKNNWEY LFKLYWLDLK GKHSLTLEEL VNAKSCWTVR STSARREKEE  300
SSNDLYDAND DHDASSDGAS RKRRRNSFSG KRGRKRQNSG TESLPKRVQN EGMTFIGDTQ  360
WASSELLEFI GHMRNGDISY ISQFDVQILL LEYVKQKNLR DPRRKSQIIC DARLTNLFRK  420
PRVGHFEMLK LLEMHFHAKE VVNGDGQKDI DSDSAQIDSG GYSDMPSKLC SDKRRKIHKK  480
IERESPANLE DYAAIDMHNI NLIYLRRSLL EDLIDDNGTF SDKIAGAFVR IRTPCVGQKQ  540
DIYRLVKVLG THKVAERYSV GKKTTDHALE ILNLDKKEEE CKRLRLSMKC GLVTRLKVGD  600
IHEKAKTFQL LRVNDWLENE KQRLSHLRDR AKKLQLLGTP EERARMINED PEVHVDPCMS  660
PNYESAEELD VKKAVDLTSR NEIDLLFLGR KGIETNSLQN HRQNCFATSR HTTISPPTEG  720
VTHGQGEGDM EPEKVWHYKD PSGSVQGPFT LLQLSKWATY FPRDLRIWLT FESEQNSLLL  780
TEVLSKQQKD FIQPSSEVEN NKSTWEGVGQ DRVDSNLTGN NSSSPIGYNV IYSSQLPSPS  840
ADYRASAREG PNPPSGTLPF MTSWKTQKDP QMLHGQAQHQ GDYSCTIPSS VVSYRPAGSH  900
DEWPPRGNIG EWNNSQDSGG MWSPTTPHMN QSNLDHQPDR CIMKKQLQND SKSNSLSGSA  960
ENLNSQMDFG SQKVHIPTPQ QSERDLATSV GTSRQSEFKT CHQEGSRWSS TADPITHDGL  1020
QLSIASAKPE SCSAVNPIRD GDSSSASCVP NQSGAHVYSP PHPATTNLSK SEETMNQRKS  1080
CEPEASNESC KPDASHAPVN QHPKPESDPT LPDTQDFECT HPSPTTEHDT KEPLKDQSRS  1140
TSVAPEGSAT KAQGQSSIAF ISETSGPPSS KIVGLQSPKD TSFLVEGDIK DKGSVTQTEQ  1200
QKEESTTFKR ENIAVDPISD SEAIVSGVLE SLTETYNLHE ETPLENFTPT SAEEEQPQCS  1260
TPIALSPWDE TSDYQGEAVD SALWGGVQDD QNNEMWSLSS PTPTLQPSGL GATKGASCAI  1320
EEVIVAQGNS GVVEPSPALE KKRIEKVPSA SIDRGVPEQV KPKPNAALSP EESRKPSGLQ  1380
LSRTSVQGST KSSGLPPSGT SLEGGTEPTG LLPSGTSLEW GTKNSGVQSL ASSLEGSKKA  1440
FVRQPSCSSL EGNTKASGRQ PSGSSIEGSK KPSDRQPSGA SQEGNTKPSG WQQPVSSLEG  1500
GTKPSGWKPS ISIDTNTKAS GWLRSSSSPD VSRKASAWQS SGSSPVAGST KASGWQRSSS  1560
SPDGNRKASV WQSSGSSPVA GSAKASGWQP SPRESSKSKP NPTWGAGQNR NSSSSHQSTT  1620
PTAKYSSETP RRQGNSNTNS AGWGDAIGNN KSWHSPSGNA SSRGSHSSHH HDRHNQGSEP  1680
WRGGSNHSRR SDHRQEHGNG GSSRSSSSRG QSQRGICRYY ENGYCRKGTS CQFLHR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320324RKRRR
2321335KRRRNSFSGKRGRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0738670.0AC073867.6 Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614387.10.0zinc finger CCCH domain-containing protein 19 isoform X2
TrEMBLA0A0E0M9M90.0A0A0E0M9M9_ORYPU; Uncharacterized protein
STRINGOPUNC10G14000.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-175DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding