PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G14720.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 198aa    MW: 20870.4 Da    PI: 6.0249
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G14720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-183181156
              AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                     + y+GVr++   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g+
  OPUNC10G14720.1 31 PVYRGVRFR--AGKWVSEIRElR-----KpSRIWLGTYATPEMAAAAYDAAALALRGH 81
                     68*****96..5*********66.....68**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-123181IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-183289IPR016177DNA-binding domain
SMARTSM003805.2E-233294IPR001471AP2/ERF domain
PROSITE profilePS5103218.2943288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-253289IPR001471AP2/ERF domain
CDDcd000185.91E-123390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEQRAAQQQG RRQSAAAACG IRRARAETRH PVYRGVRFRA GKWVSEIREL RKPSRIWLGT  60
YATPEMAAAA YDAAALALRG HGTALNFPDA ARSRPAPASV SADDVRAAAA AAAAMAAQRA  120
HHQGGGEEDD DSRRQLEDGG GGVVDEDDVL EMPRLMVSMA EGLMISPPPV MLGPAAAAEA  180
DGGIMDEGGG VMSLWDHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1130881272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788941e-146AC078894.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence.
GenBankAP0149661e-146AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY2582801e-146AY258280.1 Oryza sativa (japonica cultivar-group) CR103 transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613984.13e-66ethylene-responsive transcription factor ERF027
TrEMBLA0A0E0M9Y21e-137A0A0E0M9Y2_ORYPU; Uncharacterized protein
STRINGOPUNC10G14720.11e-137(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.17e-17ERF family protein