PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G18230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 283aa    MW: 31115.9 Da    PI: 8.6386
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G18230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30165223259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+++Hnh+
  OPUNC10G18230.1 165 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPTMLVVTYTSDHNHP 223
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.374159225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-31161225IPR003657WRKY domain
SuperFamilySSF1182904.97E-26163225IPR003657WRKY domain
SMARTSM007741.4E-36164224IPR003657WRKY domain
PfamPF031061.5E-25166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSISQMMRQQ VEKPSKKAKM SQWREAWAAP RPARESSADQ GDLSDVVRAS LQLQTAPRDQ  60
AASPPYVHLL GGEDELAVVS QHADEQPISM DACDLLHALL PPVVQVQQQG ASVTGEEPVA  120
ELFAGAHHHH LHVVPPIKRR PSQTKKVVCI PAPTAGTSGG EVVPSDLWAW RKYGQKPIKG  180
SPYPRGYYRC SSSKGCSARK QVERSRADPT MLVVTYTSDH NHPWPTHRNA LAGSTRPSSS  240
SNSNIPAGLL LQLQHSSHHH LITTTTITHL KQEDDDHHQP SWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-25142226380Disease resistance protein RRS1
5w3x_D9e-25142226380Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9546101e-137KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613758.17e-95protein WRKY1
RefseqXP_015613759.17e-95protein WRKY1
TrEMBLA0A0E0MB850.0A0A0E0MB85_ORYPU; Uncharacterized protein
STRINGOPUNC10G18230.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-57WRKY DNA-binding protein 35