PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G02200.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 208aa    MW: 23161.4 Da    PI: 8.8558
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G02200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.21.7e-191212812128
              NAM  12 eelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                      ++l+++yL + + gk+  ++e++i+ vd+y++ePwdL  k     +   e+   +fF++ ++++ ++++k+r++ +g+W  + + kev++k g 
  OPUNC11G02200.1  12 QDLITFYLPRLIVGKPpKDTEKFIRCVDVYRSEPWDLAgKfapvpR--CEKGGRFFFTSCKRHKGSSTKKERTAGAGTWVRQNS-KEVKNKAGV 102
                      79*************94455566**************843454222..255588**************************8865.999999*** PP

              NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                      +vg  + + f     ++g+ tdW+m+e + 
  OPUNC11G02200.1 103 KVGETQNFRFK----KDGRYTDWLMEEHHC 128
                      **********7....78899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.2631148IPR003441NAC domain
PfamPF023658.8E-912127IPR003441NAC domain
SuperFamilySSF1019412.75E-2012148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MYPSGCHVLV HQDLITFYLP RLIVGKPPKD TEKFIRCVDV YRSEPWDLAG KFAPVPRCEK  60
GGRFFFTSCK RHKGSSTKKE RTAGAGTWVR QNSKEVKNKA GVKVGETQNF RFKKDGRYTD  120
WLMEEHHCCR QQAVAGDEEP VICRMYVSPR APPDSAARQE SAAFVQPPRD PATGDREEAR  180
AAVRGEDGRC CLGMSGGAPE LCGGVHAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005020.0BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005040.0BX000504.2 Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619129.11e-102NAC domain-containing protein 41
TrEMBLA0A0E0MC841e-153A0A0E0MC84_ORYPU; Uncharacterized protein
STRINGOPUNC11G02200.11e-154(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.14e-10NAC domain containing protein 50