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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OPUNC11G02380.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | GRAS | ||||||||
| Protein Properties | Length: 1056aa MW: 116018 Da PI: 8.5778 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 188.4 | 4.9e-58 | 50 | 388 | 22 | 288 |
GRAS 22 alLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
++Lar la+ +g p +Rlaa ++ La+rl+r v+ + +al + +++ aa++ f+e+sP++k+++++ N+aI+eave+e+ vH+
OPUNC11G02380.2 50 RCLARTTGLAAAAGdGPRKRLAAAMVDCLARRLLRPVPAITDALIDPSGY---LDRRSAARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHV 140
57999999999999679***********************9998555444...8999999********************************** PP
GRAS 115 iDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEa 201
+ ++ +q QW+ Ll++L R+egp +R+T+v++ + e l +++e ++ Aeel ++f+f+v v+ +ledl++++L +k+gEa
OPUNC11G02380.2 141 VGMSgpFTQTCQWIQLLHELRRRAEGPSrAVRLTVVHD----DGEFLAKMAELVSDEAEELVMEFKFHV-VVGQLEDLNFSNLhgvlGIKSGEA 229
***86679****************776659********....9*************************9.7999********966667899*** PP
GRAS 202 laVnlvlqlhrll....................................................................desvsleserdev 227
laV++ lqlhrll + ++ + ++
OPUNC11G02380.2 230 LAVSCTLQLHRLLaaaddayssrsahlnqmaiiaqlqhmaasscppsscgasvqckddddsyrspgtplafvsppastphfQTPA----PLASF 319
***************************************************************************7744444444....5666* PP
GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak....lpres....eerikvEre 288
L +v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl+a l++ + +er+ vEr+
OPUNC11G02380.2 320 LFAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAavtaLAASHlwppDERAQVERV 388
********************************************7663333222225566666666666 PP
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| 2 | GRAS | 205.2 | 3.7e-63 | 439 | 747 | 111 | 374 |
GRAS 111 rvHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.... 198
vHi+D++ s ++ QW+ Ll+ + p+g+p+l +T++++ ++e l +++ L+k Ae+l+v+f+f v rl++l++++Lr
OPUNC11G02380.2 439 VVHIVDLSCSaaHPWQWLKLLDDFHGWPGGAPELYLTVLHD----DNEFLADMQSLLSKKAESLQVSFHFIS-VIGRLDTLDFSNLRSTFqikf 527
59*****8653389***************************....9**************************.799**********54444555 PP
GRAS 199 gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhnse 251
g a+a++++lq+h ll s +++ ++L++++ l+P+++v++eq+adhn+
OPUNC11G02380.2 528 GVAVAISCALQMHCLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIQALKPNIMVIMEQDADHNTL 621
*******************************************************98666777778899************************* PP
GRAS 252 sFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
F +rf e l+yy+alfd+++a pr ++er vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a + k l
OPUNC11G02380.2 622 LFCDRFNEVLNYYAALFDCFHAVaaaNPRRTDERLRVERMILREEIKNILVCEGVHRHERHEKLDQWAMYMEESGFHNVQLSFSAIREGKENLL 715
*******************965512146667*************************************************************** PP
GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++ + + +e++g+l+l W + +L+s+SaWr
OPUNC11G02380.2 716 SFGLKNCQNKEDRGCLLLSWGSTNLYSISAWR 747
***888*************************8 PP
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| 3 | GRAS | 76.1 | 6.4e-24 | 854 | 964 | 37 | 146 |
GRAS 37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaL 128
+++Rlaa+f+ ALa++l++ ++l++al +s++s + + + a++ ++v P+lk+++lt+N+aIlea+ege+ vH++Df+ + +++QW+aL
OPUNC11G02380.2 854 ALKRLAAVFADALARKLLNLIPGLSRALLSSASSADAHL-VPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIAL 946
789*************************99999855544.446778899********************************966899******* PP
GRAS 129 lqaLasRpegppslRiTg 146
++a+ R++ + R +
OPUNC11G02380.2 947 FHAFRGRRGARRQRRASA 964
*****9998877666555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 31.212 | 4 | 727 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.7E-55 | 50 | 388 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.3E-60 | 439 | 747 | IPR005202 | Transcription factor GRAS |
| PROSITE profile | PS50985 | 12.905 | 788 | 1056 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 2.2E-21 | 854 | 964 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1056 aa Download sequence Send to blast |
MFYGTDAASP ELSLCSPYGP WTQGHGPTKQ LGLALLECAA HRLGPWRRPR CLARTTGLAA 60 AAGDGPRKRL AAAMVDCLAR RLLRPVPAIT DALIDPSGYL DRRSAARRGF FELSPFPKVA 120 FVVGNRAIVE AVENESLVHV VGMSGPFTQT CQWIQLLHEL RRRAEGPSRA VRLTVVHDDG 180 EFLAKMAELV SDEAEELVME FKFHVVVGQL EDLNFSNLHG VLGIKSGEAL AVSCTLQLHR 240 LLAAADDAYS SRSAHLNQMA IIAQLQHMAA SSCPPSSCGA SVQCKDDDDS YRSPGTPLAF 300 VSPPASTPHF QTPAPLASFL FAVRALSPKI VVVAEQDADH NGVSFRKRFC EALHHYAAVF 360 DSLDAAAVTA LAASHLWPPD ERAQVERVVT KATGCGVLGG FAPGPRLSCR GYHPSRSSTQ 420 GAGTFPLPES GSGFRDVLVV HIVDLSCSAA HPWQWLKLLD DFHGWPGGAP ELYLTVLHDD 480 NEFLADMQSL LSKKAESLQV SFHFISVIGR LDTLDFSNLR STFQIKFGVA VAISCALQMH 540 CLLLVDDNLS STSIAQLQKM ANFTQPKQMA SSVCSPASTL NYLQTPSPRT PKLLARLLSA 600 IQALKPNIMV IMEQDADHNT LLFCDRFNEV LNYYAALFDC FHAVAAANPR RTDERLRVER 660 MILREEIKNI LVCEGVHRHE RHEKLDQWAM YMEESGFHNV QLSFSAIREG KENLLSFGLK 720 NCQNKEDRGC LLLSWGSTNL YSISAWRQNR GSSSGSREHI VISYPKFMRL IKRLRNSYGY 780 QLRLCCTNRG MFQDDMLSSA MSSPASSVYS PSPSPSNGSW VQELSHDQQS VRLIGLLYQC 840 AAEVATGAFD PPHALKRLAA VFADALARKL LNLIPGLSRA LLSSASSADA HLVPVARRHM 900 FDVLPFLKLA YLTTNHAILE AMEGERFVHV VDFSGPAANP VQWIALFHAF RGRRGARRQR 960 RASASLPPRR RRREEARRRR LPHPGLDHRA LQPEKLRRAA RAGAEHAAAA EPRRVRGAVA 1020 VTPLTSSSNG GAPDVDAEAG ELPVGGEVAI YPRRSW |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 7e-14 | 595 | 746 | 232 | 378 | Protein SCARECROW |
| 5b3h_A | 7e-14 | 595 | 746 | 231 | 377 | Protein SCARECROW |
| 5b3h_D | 7e-14 | 595 | 746 | 231 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 968 | 980 | RRRRREEARRRRL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FQ377947 | 0.0 | FQ377947.1 Oryza glaberrima chromosome 12. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015619626.1 | 0.0 | scarecrow-like protein 3 | ||||
| TrEMBL | A0A0E0MCB3 | 0.0 | A0A0E0MCB3_ORYPU; Uncharacterized protein | ||||
| STRING | OPUNC11G02380.1 | 0.0 | (Oryza punctata) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G50420.1 | 2e-56 | scarecrow-like 3 | ||||




