PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G02380.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1056aa    MW: 116018 Da    PI: 8.5778
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G02380.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS188.44.9e-585038822288
             GRAS  22 alLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                      ++Lar   la+ +g  p +Rlaa ++  La+rl+r v+ + +al   +      +++ aa++ f+e+sP++k+++++ N+aI+eave+e+ vH+
  OPUNC11G02380.2  50 RCLARTTGLAAAAGdGPRKRLAAAMVDCLARRLLRPVPAITDALIDPSGY---LDRRSAARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHV 140
                      57999999999999679***********************9998555444...8999999********************************** PP

             GRAS 115 iDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEa 201
                      + ++   +q  QW+ Ll++L  R+egp   +R+T+v++    + e l +++e  ++ Aeel ++f+f+v v+ +ledl++++L     +k+gEa
  OPUNC11G02380.2 141 VGMSgpFTQTCQWIQLLHELRRRAEGPSrAVRLTVVHD----DGEFLAKMAELVSDEAEELVMEFKFHV-VVGQLEDLNFSNLhgvlGIKSGEA 229
                      ***86679****************776659********....9*************************9.7999********966667899*** PP

             GRAS 202 laVnlvlqlhrll....................................................................desvsleserdev 227
                      laV++ lqlhrll                                                                    + ++    +  ++
  OPUNC11G02380.2 230 LAVSCTLQLHRLLaaaddayssrsahlnqmaiiaqlqhmaasscppsscgasvqckddddsyrspgtplafvsppastphfQTPA----PLASF 319
                      ***************************************************************************7744444444....5666* PP

             GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak....lpres....eerikvEre 288
                      L +v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl+a     l++ +    +er+ vEr+
  OPUNC11G02380.2 320 LFAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAavtaLAASHlwppDERAQVERV 388
                      ********************************************7663333222225566666666666 PP

2GRAS205.23.7e-63439747111374
             GRAS 111 rvHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.... 198
                       vHi+D++ s  ++ QW+ Ll+ +   p+g+p+l +T++++    ++e l  +++ L+k Ae+l+v+f+f   v  rl++l++++Lr       
  OPUNC11G02380.2 439 VVHIVDLSCSaaHPWQWLKLLDDFHGWPGGAPELYLTVLHD----DNEFLADMQSLLSKKAESLQVSFHFIS-VIGRLDTLDFSNLRSTFqikf 527
                      59*****8653389***************************....9**************************.799**********54444555 PP

             GRAS 199 gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhnse 251
                      g a+a++++lq+h ll                                           s  +++   ++L++++ l+P+++v++eq+adhn+ 
  OPUNC11G02380.2 528 GVAVAISCALQMHCLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIQALKPNIMVIMEQDADHNTL 621
                      *******************************************************98666777778899************************* PP

             GRAS 252 sFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                       F +rf e l+yy+alfd+++a     pr ++er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a  + k  l 
  OPUNC11G02380.2 622 LFCDRFNEVLNYYAALFDCFHAVaaaNPRRTDERLRVERMILREEIKNILVCEGVHRHERHEKLDQWAMYMEESGFHNVQLSFSAIREGKENLL 715
                      *******************965512146667*************************************************************** PP

             GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       ++ +  + +e++g+l+l W + +L+s+SaWr
  OPUNC11G02380.2 716 SFGLKNCQNKEDRGCLLLSWGSTNLYSISAWR 747
                      ***888*************************8 PP

3GRAS76.16.4e-2485496437146
             GRAS  37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaL 128
                      +++Rlaa+f+ ALa++l++  ++l++al +s++s + +  +  a++  ++v P+lk+++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL
  OPUNC11G02380.2 854 ALKRLAAVFADALARKLLNLIPGLSRALLSSASSADAHL-VPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIAL 946
                      789*************************99999855544.446778899********************************966899******* PP

             GRAS 129 lqaLasRpegppslRiTg 146
                      ++a+  R++   + R  +
  OPUNC11G02380.2 947 FHAFRGRRGARRQRRASA 964
                      *****9998877666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.2124727IPR005202Transcription factor GRAS
PfamPF035141.7E-5550388IPR005202Transcription factor GRAS
PfamPF035141.3E-60439747IPR005202Transcription factor GRAS
PROSITE profilePS5098512.9057881056IPR005202Transcription factor GRAS
PfamPF035142.2E-21854964IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1056 aa     Download sequence    Send to blast
MFYGTDAASP ELSLCSPYGP WTQGHGPTKQ LGLALLECAA HRLGPWRRPR CLARTTGLAA  60
AAGDGPRKRL AAAMVDCLAR RLLRPVPAIT DALIDPSGYL DRRSAARRGF FELSPFPKVA  120
FVVGNRAIVE AVENESLVHV VGMSGPFTQT CQWIQLLHEL RRRAEGPSRA VRLTVVHDDG  180
EFLAKMAELV SDEAEELVME FKFHVVVGQL EDLNFSNLHG VLGIKSGEAL AVSCTLQLHR  240
LLAAADDAYS SRSAHLNQMA IIAQLQHMAA SSCPPSSCGA SVQCKDDDDS YRSPGTPLAF  300
VSPPASTPHF QTPAPLASFL FAVRALSPKI VVVAEQDADH NGVSFRKRFC EALHHYAAVF  360
DSLDAAAVTA LAASHLWPPD ERAQVERVVT KATGCGVLGG FAPGPRLSCR GYHPSRSSTQ  420
GAGTFPLPES GSGFRDVLVV HIVDLSCSAA HPWQWLKLLD DFHGWPGGAP ELYLTVLHDD  480
NEFLADMQSL LSKKAESLQV SFHFISVIGR LDTLDFSNLR STFQIKFGVA VAISCALQMH  540
CLLLVDDNLS STSIAQLQKM ANFTQPKQMA SSVCSPASTL NYLQTPSPRT PKLLARLLSA  600
IQALKPNIMV IMEQDADHNT LLFCDRFNEV LNYYAALFDC FHAVAAANPR RTDERLRVER  660
MILREEIKNI LVCEGVHRHE RHEKLDQWAM YMEESGFHNV QLSFSAIREG KENLLSFGLK  720
NCQNKEDRGC LLLSWGSTNL YSISAWRQNR GSSSGSREHI VISYPKFMRL IKRLRNSYGY  780
QLRLCCTNRG MFQDDMLSSA MSSPASSVYS PSPSPSNGSW VQELSHDQQS VRLIGLLYQC  840
AAEVATGAFD PPHALKRLAA VFADALARKL LNLIPGLSRA LLSSASSADA HLVPVARRHM  900
FDVLPFLKLA YLTTNHAILE AMEGERFVHV VDFSGPAANP VQWIALFHAF RGRRGARRQR  960
RASASLPPRR RRREEARRRR LPHPGLDHRA LQPEKLRRAA RAGAEHAAAA EPRRVRGAVA  1020
VTPLTSSSNG GAPDVDAEAG ELPVGGEVAI YPRRSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-14595746232378Protein SCARECROW
5b3h_A7e-14595746231377Protein SCARECROW
5b3h_D7e-14595746231377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1968980RRRRREEARRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619626.10.0scarecrow-like protein 3
TrEMBLA0A0E0MCB30.0A0A0E0MCB3_ORYPU; Uncharacterized protein
STRINGOPUNC11G02380.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-56scarecrow-like 3