PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G02380.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 749aa    MW: 83808.1 Da    PI: 8.6296
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G02380.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.42e-81204402374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      v lL ecA +v++g++e+a+   ++++ +   ++ p+qRl + ++  La+rl++s ++l  al  ps+    ++s+  aa++ f+++ P+l  +
  OPUNC11G02380.3  20 VPLLHECASHVTEGSFEKADFSFKNIRMQTFIADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EQSTLRAARCNFFKLNPYLSTG 111
                      6789**************************************************9999998874444443..35555567778*********** PP

             GRAS  95 hltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      ++t N+aI+ea+e e    + vHi+D++ s  ++ QW+ Ll+ +   p+g+p+l +T++++    ++e l  +++ L+k Ae+l+v+f+f   v
  OPUNC11G02380.3 112 FVTINRAIMEAMEDEkvelQVVHIVDLSCSaaHPWQWLKLLDDFHGWPGGAPELYLTVLHD----DNEFLADMQSLLSKKAESLQVSFHFIS-V 200
                      ***************9998999*****8653389***************************....9**************************.7 PP

             GRAS 183 akrledleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklv 231
                        rl++l++++Lr       g a+a++++lq+h ll                                           s  +++   ++L+++
  OPUNC11G02380.3 201 IGRLDTLDFSNLRSTFqikfGVAVAISCALQMHCLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAI 294
                      99**********54444555*******************************************************98666777778899***** PP

             GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                      + l+P+++v++eq+adhn+  F +rf e l+yy+alfd+++a     pr ++er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+
  OPUNC11G02380.3 295 QALKPNIMVIMEQDADHNTLLFCDRFNEVLNYYAALFDCFHAVaaaNPRRTDERLRVERMILREEIKNILVCEGVHRHERHEKLDQWAMYMEES 388
                      ***************************************965512146667******************************************* PP

             GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      GF++v+ls +a  + k  l  ++ +  + +e++g+l+l W + +L+s+SaWr
  OPUNC11G02380.3 389 GFHNVQLSFSAIREGKENLLSFGLKNCQNKEDRGCLLLSWGSTNLYSISAWR 440
                      ***********************888*************************8 PP

2GRAS76.83.8e-2454765737146
             GRAS  37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaL 128
                      +++Rlaa+f+ ALa++l++  ++l++al +s++s + +  +  a++  ++v P+lk+++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL
  OPUNC11G02380.3 547 ALKRLAAVFADALARKLLNLIPGLSRALLSSASSADAHL-VPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIAL 639
                      789*************************99999855544.446778899********************************966899******* PP

             GRAS 129 lqaLasRpegppslRiTg 146
                      ++a+  R++   + R  +
  OPUNC11G02380.3 640 FHAFRGRRGARRQRRASA 657
                      *****9998877666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.6961420IPR005202Transcription factor GRAS
PfamPF035146.8E-7920440IPR005202Transcription factor GRAS
PROSITE profilePS5098512.905481749IPR005202Transcription factor GRAS
PfamPF035141.3E-21547657IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKNIRMQTF IADGPLQRLS  60
TIIVDSLAHR LLSSIQGLPG ALIDPSDYFE QSTLRAARCN FFKLNPYLST GFVTINRAIM  120
EAMEDEKVEL QVVHIVDLSC SAAHPWQWLK LLDDFHGWPG GAPELYLTVL HDDNEFLADM  180
QSLLSKKAES LQVSFHFISV IGRLDTLDFS NLRSTFQIKF GVAVAISCAL QMHCLLLVDD  240
NLSSTSIAQL QKMANFTQPK QMASSVCSPA STLNYLQTPS PRTPKLLARL LSAIQALKPN  300
IMVIMEQDAD HNTLLFCDRF NEVLNYYAAL FDCFHAVAAA NPRRTDERLR VERMILREEI  360
KNILVCEGVH RHERHEKLDQ WAMYMEESGF HNVQLSFSAI REGKENLLSF GLKNCQNKED  420
RGCLLLSWGS TNLYSISAWR QNRGSSSGSR EHIVISYPKF MRLIKRLRNS YGYQLRLCCT  480
NRGMFQDDML SSAMSSPASS VYSPSPSPSN GSWVQELSHD QQSVRLIGLL YQCAAEVATG  540
AFDPPHALKR LAAVFADALA RKLLNLIPGL SRALLSSASS ADAHLVPVAR RHMFDVLPFL  600
KLAYLTTNHA ILEAMEGERF VHVVDFSGPA ANPVQWIALF HAFRGRRGAR RQRRASASLP  660
PRRRRREEAR RRRLPHPGLD HRALQPEKLR RAARAGAEHA AAAEPRRVRG AVAVTPLTSS  720
SNGGAPDVDA EAGELPVGGE VAIYPRRSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-212543925378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1661673RRRRREEARRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616660.10.0scarecrow-like protein 3 isoform X1
TrEMBLA0A0E0MCB40.0A0A0E0MCB4_ORYPU; Uncharacterized protein
STRINGOPUNC11G02380.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-75scarecrow-like 3