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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OPUNC11G02380.3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | GRAS | ||||||||
| Protein Properties | Length: 749aa MW: 83808.1 Da PI: 8.6296 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 265.4 | 2e-81 | 20 | 440 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94
v lL ecA +v++g++e+a+ ++++ + ++ p+qRl + ++ La+rl++s ++l al ps+ ++s+ aa++ f+++ P+l +
OPUNC11G02380.3 20 VPLLHECASHVTEGSFEKADFSFKNIRMQTFIADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EQSTLRAARCNFFKLNPYLSTG 111
6789**************************************************9999998874444443..35555567778*********** PP
GRAS 95 hltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
++t N+aI+ea+e e + vHi+D++ s ++ QW+ Ll+ + p+g+p+l +T++++ ++e l +++ L+k Ae+l+v+f+f v
OPUNC11G02380.3 112 FVTINRAIMEAMEDEkvelQVVHIVDLSCSaaHPWQWLKLLDDFHGWPGGAPELYLTVLHD----DNEFLADMQSLLSKKAESLQVSFHFIS-V 200
***************9998999*****8653389***************************....9**************************.7 PP
GRAS 183 akrledleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklv 231
rl++l++++Lr g a+a++++lq+h ll s +++ ++L+++
OPUNC11G02380.3 201 IGRLDTLDFSNLRSTFqikfGVAVAISCALQMHCLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAI 294
99**********54444555*******************************************************98666777778899***** PP
GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
+ l+P+++v++eq+adhn+ F +rf e l+yy+alfd+++a pr ++er vEr++l++ei+n++ ceg +r erhe+l +W + +ee+
OPUNC11G02380.3 295 QALKPNIMVIMEQDADHNTLLFCDRFNEVLNYYAALFDCFHAVaaaNPRRTDERLRVERMILREEIKNILVCEGVHRHERHEKLDQWAMYMEES 388
***************************************965512146667******************************************* PP
GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
GF++v+ls +a + k l ++ + + +e++g+l+l W + +L+s+SaWr
OPUNC11G02380.3 389 GFHNVQLSFSAIREGKENLLSFGLKNCQNKEDRGCLLLSWGSTNLYSISAWR 440
***********************888*************************8 PP
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| 2 | GRAS | 76.8 | 3.8e-24 | 547 | 657 | 37 | 146 |
GRAS 37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaL 128
+++Rlaa+f+ ALa++l++ ++l++al +s++s + + + a++ ++v P+lk+++lt+N+aIlea+ege+ vH++Df+ + +++QW+aL
OPUNC11G02380.3 547 ALKRLAAVFADALARKLLNLIPGLSRALLSSASSADAHL-VPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIAL 639
789*************************99999855544.446778899********************************966899******* PP
GRAS 129 lqaLasRpegppslRiTg 146
++a+ R++ + R +
OPUNC11G02380.3 640 FHAFRGRRGARRQRRASA 657
*****9998877666555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 37.696 | 1 | 420 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 6.8E-79 | 20 | 440 | IPR005202 | Transcription factor GRAS |
| PROSITE profile | PS50985 | 12.905 | 481 | 749 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.3E-21 | 547 | 657 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 749 aa Download sequence Send to blast |
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKNIRMQTF IADGPLQRLS 60 TIIVDSLAHR LLSSIQGLPG ALIDPSDYFE QSTLRAARCN FFKLNPYLST GFVTINRAIM 120 EAMEDEKVEL QVVHIVDLSC SAAHPWQWLK LLDDFHGWPG GAPELYLTVL HDDNEFLADM 180 QSLLSKKAES LQVSFHFISV IGRLDTLDFS NLRSTFQIKF GVAVAISCAL QMHCLLLVDD 240 NLSSTSIAQL QKMANFTQPK QMASSVCSPA STLNYLQTPS PRTPKLLARL LSAIQALKPN 300 IMVIMEQDAD HNTLLFCDRF NEVLNYYAAL FDCFHAVAAA NPRRTDERLR VERMILREEI 360 KNILVCEGVH RHERHEKLDQ WAMYMEESGF HNVQLSFSAI REGKENLLSF GLKNCQNKED 420 RGCLLLSWGS TNLYSISAWR QNRGSSSGSR EHIVISYPKF MRLIKRLRNS YGYQLRLCCT 480 NRGMFQDDML SSAMSSPASS VYSPSPSPSN GSWVQELSHD QQSVRLIGLL YQCAAEVATG 540 AFDPPHALKR LAAVFADALA RKLLNLIPGL SRALLSSASS ADAHLVPVAR RHMFDVLPFL 600 KLAYLTTNHA ILEAMEGERF VHVVDFSGPA ANPVQWIALF HAFRGRRGAR RQRRASASLP 660 PRRRRREEAR RRRLPHPGLD HRALQPEKLR RAARAGAEHA AAAEPRRVRG AVAVTPLTSS 720 SNGGAPDVDA EAGELPVGGE VAIYPRRSW |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 6e-21 | 25 | 439 | 25 | 378 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 661 | 673 | RRRRREEARRRRL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FQ377947 | 0.0 | FQ377947.1 Oryza glaberrima chromosome 12. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015616660.1 | 0.0 | scarecrow-like protein 3 isoform X1 | ||||
| TrEMBL | A0A0E0MCB4 | 0.0 | A0A0E0MCB4_ORYPU; Uncharacterized protein | ||||
| STRING | OPUNC11G02380.1 | 0.0 | (Oryza punctata) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G50420.1 | 2e-75 | scarecrow-like 3 | ||||




