PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G02380.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 745aa    MW: 83338.5 Da    PI: 8.7262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G02380.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.72.4e-83204362374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      v lL ecA +v++g++e+a+   ++++ +   ++ p+qRl + ++  La+rl++s ++l  al  ps+    ++s+  aa++ f+++ P+l  +
  OPUNC11G02380.4  20 VPLLHECASHVTEGSFEKADFSFKNIRMQTFIADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EQSTLRAARCNFFKLNPYLSTG 111
                      6789**************************************************9999998874444443..35555567778*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++t N+aI+ea+e e+ vHi+D++ s  ++ QW+ Ll+ +   p+g+p+l +T++++    ++e l  +++ L+k Ae+l+v+f+f   v  rl
  OPUNC11G02380.4 112 FVTINRAIMEAMEDEKVVHIVDLSCSaaHPWQWLKLLDDFHGWPGGAPELYLTVLHD----DNEFLADMQSLLSKKAESLQVSFHFIS-VIGRL 200
                      ***********************8653389***************************....9**************************.799** PP

             GRAS 187 edleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklvksls 235
                      ++l++++Lr       g a+a++++lq+h ll                                           s  +++   ++L++++ l+
  OPUNC11G02380.4 201 DTLDFSNLRSTFqikfGVAVAISCALQMHCLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIQALK 294
                      ********54444555*******************************************************98666777778899********* PP

             GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                      P+++v++eq+adhn+  F +rf e l+yy+alfd+++a     pr ++er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++
  OPUNC11G02380.4 295 PNIMVIMEQDADHNTLLFCDRFNEVLNYYAALFDCFHAVaaaNPRRTDERLRVERMILREEIKNILVCEGVHRHERHEKLDQWAMYMEESGFHN 388
                      ***********************************965512146667*********************************************** PP

             GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      v+ls +a  + k  l  ++ +  + +e++g+l+l W + +L+s+SaWr
  OPUNC11G02380.4 389 VQLSFSAIREGKENLLSFGLKNCQNKEDRGCLLLSWGSTNLYSISAWR 436
                      *******************888*************************8 PP

2GRAS76.83.8e-2454365337146
             GRAS  37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaL 128
                      +++Rlaa+f+ ALa++l++  ++l++al +s++s + +  +  a++  ++v P+lk+++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL
  OPUNC11G02380.4 543 ALKRLAAVFADALARKLLNLIPGLSRALLSSASSADAHL-VPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIAL 635
                      789*************************99999855544.446778899********************************966899******* PP

             GRAS 129 lqaLasRpegppslRiTg 146
                      ++a+  R++   + R  +
  OPUNC11G02380.4 636 FHAFRGRRGARRQRRASA 653
                      *****9998877666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.2741416IPR005202Transcription factor GRAS
PfamPF035148.3E-8120436IPR005202Transcription factor GRAS
PROSITE profilePS5098512.905477745IPR005202Transcription factor GRAS
PfamPF035141.3E-21543653IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKNIRMQTF IADGPLQRLS  60
TIIVDSLAHR LLSSIQGLPG ALIDPSDYFE QSTLRAARCN FFKLNPYLST GFVTINRAIM  120
EAMEDEKVVH IVDLSCSAAH PWQWLKLLDD FHGWPGGAPE LYLTVLHDDN EFLADMQSLL  180
SKKAESLQVS FHFISVIGRL DTLDFSNLRS TFQIKFGVAV AISCALQMHC LLLVDDNLSS  240
TSIAQLQKMA NFTQPKQMAS SVCSPASTLN YLQTPSPRTP KLLARLLSAI QALKPNIMVI  300
MEQDADHNTL LFCDRFNEVL NYYAALFDCF HAVAAANPRR TDERLRVERM ILREEIKNIL  360
VCEGVHRHER HEKLDQWAMY MEESGFHNVQ LSFSAIREGK ENLLSFGLKN CQNKEDRGCL  420
LLSWGSTNLY SISAWRQNRG SSSGSREHIV ISYPKFMRLI KRLRNSYGYQ LRLCCTNRGM  480
FQDDMLSSAM SSPASSVYSP SPSPSNGSWV QELSHDQQSV RLIGLLYQCA AEVATGAFDP  540
PHALKRLAAV FADALARKLL NLIPGLSRAL LSSASSADAH LVPVARRHMF DVLPFLKLAY  600
LTTNHAILEA MEGERFVHVV DFSGPAANPV QWIALFHAFR GRRGARRQRR ASASLPPRRR  660
RREEARRRRL PHPGLDHRAL QPEKLRRAAR AGAEHAAAAE PRRVRGAVAV TPLTSSSNGG  720
APDVDAEAGE LPVGGEVAIY PRRSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-232543525378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1657669RRRRREEARRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616660.10.0scarecrow-like protein 3 isoform X1
TrEMBLA0A0E0MCB50.0A0A0E0MCB5_ORYPU; Uncharacterized protein
STRINGOPUNC11G02380.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-77scarecrow-like 3