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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OPUNC11G02380.4 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | GRAS | ||||||||
| Protein Properties | Length: 745aa MW: 83338.5 Da PI: 8.7262 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 271.7 | 2.4e-83 | 20 | 436 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94
v lL ecA +v++g++e+a+ ++++ + ++ p+qRl + ++ La+rl++s ++l al ps+ ++s+ aa++ f+++ P+l +
OPUNC11G02380.4 20 VPLLHECASHVTEGSFEKADFSFKNIRMQTFIADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EQSTLRAARCNFFKLNPYLSTG 111
6789**************************************************9999998874444443..35555567778*********** PP
GRAS 95 hltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
++t N+aI+ea+e e+ vHi+D++ s ++ QW+ Ll+ + p+g+p+l +T++++ ++e l +++ L+k Ae+l+v+f+f v rl
OPUNC11G02380.4 112 FVTINRAIMEAMEDEKVVHIVDLSCSaaHPWQWLKLLDDFHGWPGGAPELYLTVLHD----DNEFLADMQSLLSKKAESLQVSFHFIS-VIGRL 200
***********************8653389***************************....9**************************.799** PP
GRAS 187 edleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklvksls 235
++l++++Lr g a+a++++lq+h ll s +++ ++L++++ l+
OPUNC11G02380.4 201 DTLDFSNLRSTFqikfGVAVAISCALQMHCLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIQALK 294
********54444555*******************************************************98666777778899********* PP
GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
P+++v++eq+adhn+ F +rf e l+yy+alfd+++a pr ++er vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++
OPUNC11G02380.4 295 PNIMVIMEQDADHNTLLFCDRFNEVLNYYAALFDCFHAVaaaNPRRTDERLRVERMILREEIKNILVCEGVHRHERHEKLDQWAMYMEESGFHN 388
***********************************965512146667*********************************************** PP
GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
v+ls +a + k l ++ + + +e++g+l+l W + +L+s+SaWr
OPUNC11G02380.4 389 VQLSFSAIREGKENLLSFGLKNCQNKEDRGCLLLSWGSTNLYSISAWR 436
*******************888*************************8 PP
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| 2 | GRAS | 76.8 | 3.8e-24 | 543 | 653 | 37 | 146 |
GRAS 37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaL 128
+++Rlaa+f+ ALa++l++ ++l++al +s++s + + + a++ ++v P+lk+++lt+N+aIlea+ege+ vH++Df+ + +++QW+aL
OPUNC11G02380.4 543 ALKRLAAVFADALARKLLNLIPGLSRALLSSASSADAHL-VPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIAL 635
789*************************99999855544.446778899********************************966899******* PP
GRAS 129 lqaLasRpegppslRiTg 146
++a+ R++ + R +
OPUNC11G02380.4 636 FHAFRGRRGARRQRRASA 653
*****9998877666555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 38.274 | 1 | 416 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 8.3E-81 | 20 | 436 | IPR005202 | Transcription factor GRAS |
| PROSITE profile | PS50985 | 12.905 | 477 | 745 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.3E-21 | 543 | 653 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 745 aa Download sequence Send to blast |
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKNIRMQTF IADGPLQRLS 60 TIIVDSLAHR LLSSIQGLPG ALIDPSDYFE QSTLRAARCN FFKLNPYLST GFVTINRAIM 120 EAMEDEKVVH IVDLSCSAAH PWQWLKLLDD FHGWPGGAPE LYLTVLHDDN EFLADMQSLL 180 SKKAESLQVS FHFISVIGRL DTLDFSNLRS TFQIKFGVAV AISCALQMHC LLLVDDNLSS 240 TSIAQLQKMA NFTQPKQMAS SVCSPASTLN YLQTPSPRTP KLLARLLSAI QALKPNIMVI 300 MEQDADHNTL LFCDRFNEVL NYYAALFDCF HAVAAANPRR TDERLRVERM ILREEIKNIL 360 VCEGVHRHER HEKLDQWAMY MEESGFHNVQ LSFSAIREGK ENLLSFGLKN CQNKEDRGCL 420 LLSWGSTNLY SISAWRQNRG SSSGSREHIV ISYPKFMRLI KRLRNSYGYQ LRLCCTNRGM 480 FQDDMLSSAM SSPASSVYSP SPSPSNGSWV QELSHDQQSV RLIGLLYQCA AEVATGAFDP 540 PHALKRLAAV FADALARKLL NLIPGLSRAL LSSASSADAH LVPVARRHMF DVLPFLKLAY 600 LTTNHAILEA MEGERFVHVV DFSGPAANPV QWIALFHAFR GRRGARRQRR ASASLPPRRR 660 RREEARRRRL PHPGLDHRAL QPEKLRRAAR AGAEHAAAAE PRRVRGAVAV TPLTSSSNGG 720 APDVDAEAGE LPVGGEVAIY PRRSW |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 8e-23 | 25 | 435 | 25 | 378 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 657 | 669 | RRRRREEARRRRL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FQ377947 | 0.0 | FQ377947.1 Oryza glaberrima chromosome 12. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015616660.1 | 0.0 | scarecrow-like protein 3 isoform X1 | ||||
| TrEMBL | A0A0E0MCB5 | 0.0 | A0A0E0MCB5_ORYPU; Uncharacterized protein | ||||
| STRING | OPUNC11G02380.1 | 0.0 | (Oryza punctata) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G50420.1 | 1e-77 | scarecrow-like 3 | ||||




