PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G02380.5
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 453aa    MW: 48801.7 Da    PI: 7.3779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G02380.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS200.41e-615040922308
             GRAS  22 alLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                      ++Lar   la+ +g  p +Rlaa ++  La+rl+r v+ + +al   +      +++ aa++ f+e+sP++k+++++ N+aI+eave+e+ vH+
  OPUNC11G02380.5  50 RCLARTTGLAAAAGdGPRKRLAAAMVDCLARRLLRPVPAITDALIDPSGY---LDRRSAARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHV 140
                      57999999999999679***********************9998555444...8999999********************************** PP

             GRAS 115 iDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEa 201
                      + ++   +q  QW+ Ll++L  R+egp   +R+T+v++    + e l +++e  ++ Aeel ++f+f+v v+ +ledl++++L     +k+gEa
  OPUNC11G02380.5 141 VGMSgpFTQTCQWIQLLHELRRRAEGPSrAVRLTVVHD----DGEFLAKMAELVSDEAEELVMEFKFHV-VVGQLEDLNFSNLhgvlGIKSGEA 229
                      ***86679****************776659********....9*************************9.7999********966667899*** PP

             GRAS 202 laVnlvlqlhrll....................................................................desvsleserdev 227
                      laV++ lqlhrll                                                                    + ++    +  ++
  OPUNC11G02380.5 230 LAVSCTLQLHRLLaaaddayssrsahlnqmaiiaqlqhmaasscppsscgasvqckddddsyrspgtplafvsppastphfQTPA----PLASF 319
                      ***************************************************************************7744444444....5666* PP

             GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak....lpres....eerikvErellgreivnvvacegae.rrer 308
                      L +v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl+a     l++ +    +er+ vEr+++g+ei+  ++ ++++ rr+ 
  OPUNC11G02380.5 320 LFAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAavtaLAASHlwppDERAQVERVVVGEEIKGPLSFATSKpRRQA 409
                      ********************************************76644443344488999***************98888777645554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.7864453IPR005202Transcription factor GRAS
PfamPF035143.6E-5950409IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MFYGTDAASP ELSLCSPYGP WTQGHGPTKQ LGLALLECAA HRLGPWRRPR CLARTTGLAA  60
AAGDGPRKRL AAAMVDCLAR RLLRPVPAIT DALIDPSGYL DRRSAARRGF FELSPFPKVA  120
FVVGNRAIVE AVENESLVHV VGMSGPFTQT CQWIQLLHEL RRRAEGPSRA VRLTVVHDDG  180
EFLAKMAELV SDEAEELVME FKFHVVVGQL EDLNFSNLHG VLGIKSGEAL AVSCTLQLHR  240
LLAAADDAYS SRSAHLNQMA IIAQLQHMAA SSCPPSSCGA SVQCKDDDDS YRSPGTPLAF  300
VSPPASTPHF QTPAPLASFL FAVRALSPKI VVVAEQDADH NGVSFRKRFC EALHHYAAVF  360
DSLDAAAVTA LAASHLWPPD ERAQVERVVV GEEIKGPLSF ATSKPRRQAA ESLVDLRRDP  420
GSPVAAITRA GVALRVPALF PSRSPDQGSG TFW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619131.10.0scarecrow-like protein 3
TrEMBLA0A0E0MCB60.0A0A0E0MCB6_ORYPU; Uncharacterized protein
STRINGOPUNC11G02380.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-43scarecrow-like 3