PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G02570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 137aa    MW: 14720.8 Da    PI: 10.9776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G02570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-055695548
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48
                     h+++ r   +riN++++eL +l+ +a    ++ +s ae+Le A+
  OPUNC11G02570.1 56 HSAAAREWWRRINNKMAELSRLILSA----ARMNSTAEMLEAAT 95
                     8888899999***************8....577********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MGRWVKIEWE QGKGSFAFLE LKKGGAVFVR GAGATEVKKG ATVGGGDDVC HNQPVHSAAA  60
REWWRRINNK MAELSRLILS AARMNSTAEM LEAATATYGS TSSAPAAALS SISHRGPLLH  120
FSQQRRLPSP PSCARKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0878524e-37AC087852.11 Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete sequence.
GenBankAP0149594e-37AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-37CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MCD96e-96A0A0E0MCD9_ORYPU; Uncharacterized protein
STRINGOPUNC11G02570.11e-96(Oryza punctata)