PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G03540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 899aa    MW: 97610.1 Da    PI: 6.5359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G03540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000737047411355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  OPUNC11G03540.1 704 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 741
                      67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-315162IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.493691740IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-4704753IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MAVGEALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHTSCPAGSE PSEALPTDVG  60
CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGTANDH GLPSEVAAEM  120
SYQFRVGIQT IAIIPVLPRG VLQLGSTGVV LENKSFMTHA KKLCSQLNNR SSMAVSSSVK  180
NSSGQQGRSR PLHGASNVQS KENRSKLFSQ FPVTCEQYNH PDTMAMSGST SLNACMNGSA  240
QLNGQAVREH IVYSKPDVRF IQQVYRDGQL GSNAQSIAMS SDLISSSLRS VQKQPLLMNN  300
ISQLEFGDGA DTSADLQKNV LLKPLVCLDP FIHDRNINIS HGIAEVSNSI NDHVNFDFLS  360
GGARVVRANL CTSATSQVLD RRSHSVSGML LHRQPIVSCE VPQSSEFSTK MGSLERGSFR  420
ISSAPSSESD VQISNGLNTS ISQENQLSVS NHICQDQKIN NGVNDLSATL STERINNMDG  480
CKPPGLSVEK TSPLFMEQSV ENDLFDILGP QFHHLCHNAG ADLVPWTDAK PESSDRDVPE  540
SSIHADSAPL FSSRDNKLYS GIFSLTDTDQ LLDAVISNVN PAGKQSSDDS ASCKTSLTHI  600
PATSYLCSKE MKQCGSSGVP SVLIKNESAQ FIKQPCLAEN TEDGCLSQNN GMHKSQIRLW  660
IESGQSMKCE SASASNSKGL DTPSKANRKR SRPGESPKPR PKDRQLIQDR IKELREMVPN  720
GAKCSIDALL EKTVKHMLFL QSVTKHADKL KDSTESKILG SENGPVWKDY FEGGATWAFD  780
VGSQSMTCPI IVEDLDRPRQ MLVEMICEDR GIFLEIADFI KGLGLTILRG AMEARKSKIW  840
ARFTVEANRD VTRMEIFLSL VRLLEPNCDS SGAAENANNV NMPLGLAHQP VIPATGRIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616921.10.0transcription factor LHW isoform X1
TrEMBLA0A0E0MCQ20.0A0A0E0MCQ2_ORYPU; Uncharacterized protein
STRINGOPUNC11G03540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-54conserved peptide upstream open reading frame 7