PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G04000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 423aa    MW: 44351.8 Da    PI: 8.9965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G04000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.6e-06184207123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+dC+++F  +++L+ H +t H
  OPUNC11G04000.1 184 FSCSDCDEVFVKPDSLELHRSTrH 207
                      89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575121No hitNo description
PROSITE profilePS501579.473184212IPR007087Zinc finger, C2H2
PROSITE patternPS000280186207IPR007087Zinc finger, C2H2
SuperFamilySSF563992.01E-19209422No hitNo description
Gene3DG3DSA:3.90.228.103.9E-11211421IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSRVGSWGSM AFYSSSSSSS CKSRSQPVAA AAEGKNGGGG GGKKEKRRRS ISRSITCAGS  60
ICSTKESSVA RRGRGRRCRS GGGGDGGGGG STSSRSLMGG PEYHGDSAAA AVSASSSFNS  120
VMTSATTASS SSTTTTSPPS ALSSPLSSIG GSFRAMQIRK LSGCYLHSHS VLDPRTLSAA  180
AAVFSCSDCD EVFVKPDSLE LHRSTRHAVS ELGQDDTSRN IVEIIFQSSW LKKNAPVCKI  240
DRILKVQSSD KTIKRFEQYK ELVKEKASGD EAKNKKNPRC VADGNELLRF HCTTFACSLG  300
LAGGTALCCA SSSPPPLHCK LCSIIKDGFR VDGNGRIATM ATSGRAHDTA EVSPDGEKRA  360
MLVCRVVAGR VKKLTGSSSS SSEEHDCDSV SPCSEGVYSD LDELFVFSPR AILPCFVVIY  420
SGY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109480.0AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616600.10.0uncharacterized protein LOC4349886
TrEMBLA0A0E0MCW30.0A0A0E0MCW3_ORYPU; Uncharacterized protein
STRINGOPUNC11G04000.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-79C2H2-like zinc finger protein