PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G07320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22637.1 Da    PI: 8.7151
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G07320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF435.7e-14342241
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     r +n+  r vt+ +Rr+g++KK  ELS+LC ++++++++ 
  OPUNC11G07320.1  3 RLSNNAARRVTLRRRRAGLIKKVTELSILCSVQASIVVYN 42
                     67999********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.9142IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-5153IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-16288IPR002100Transcription factor, MADS-box
PfamPF003192.1E-13551IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MARLSNNAAR RVTLRRRRAG LIKKVTELSI LCSVQASIVV YNIDEAGDPV AWPSVEEAKN  60
MWSKLMDMPE ATQKKWMQDS KTLLQQQIAK LQKKLGNLKA ENYRREITNI ISELTGGRRK  120
NLDDLSPEMV KDVKLEVAKH REVIRNRIVE LRVQGASSSV VVAPQEEIVA PHAFQFDLNE  180
PALVDDDVPI VREEADLPCN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0ME251e-143A0A0E0ME25_ORYPU; Uncharacterized protein
STRINGOPUNC11G07320.11e-144(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1651545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.11e-10AGAMOUS-like 36