PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC11G07890.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 164aa MW: 18206.7 Da PI: 10.2312

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC11G07890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.7	3.9e-23	39	128	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle.leHnHe 88 fY++YA ++GF+vr sks s+ ++ i++r+fvC+++g ++++++ ++k+rr+ra+ r C a+l+v+++ +++w v+++ ++H He OPUNC11G07890.1 39 FYCAYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCTyNDHVHE 128 9************************************999988787999****************************986778776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-21	39	128	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MPLSAGDEDA AVPGPSSVGE PREPEAGMEF ASPEEARAFY CAYAARAGFR VRSSKSFASR 60 IDDAIIMRRF VCTRQGLPSR KDTLLDASKK RRNRASARAA CPAMLQVNRR PSSRWLVSRC 120 TYNDHVHEHA AVTIQLSTNL FNLLQEPHFL HQLPPPSTKK TALN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135459	1e-145	AC135459.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0004P24, complete sequence.
GenBank	AC138000	1e-145	AC138000.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0024M06, complete sequence.
GenBank	AP014967	1e-145	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615544.1	2e-53	protein FAR1-RELATED SEQUENCE 9
Refseq	XP_025877014.1	2e-53	protein FAR1-RELATED SEQUENCE 9
TrEMBL	A0A0E0ME92	1e-118	A0A0E0ME92_ORYPU; Uncharacterized protein
STRING	OPUNC11G07890.1	1e-119	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25380	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	7e-11	FAR1-related sequence 12